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View Structure Prediction Details

Protein: CE04416
Organism: Caenorhabditis elegans
Length: 582 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE04416.

Description E-value Query
Range
Subject
Range
CE34540 - lysosomal carboxypeptidase status:Partially_confirmed UniProt:Q19590 protein_id:AAA83509.2
429.0 [0..1] [582..1]

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Predicted Domain #1
Region A:
Residues: [1-81]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSRVLCLIAF SIGLTICHVS PPMVVGRPRD GLVAGDPAEG PTTEDKYMIY SDITQKVDHF  60
   61 SNGTNNGVWQ QRYQYNSKFY N

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 13.0
Match: 2gbcA
Description: No description for 2gbcA was found.

Predicted Domain #2
Region A:
Residues: [82-405]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KTTGYVFLML GGEGSINVTN GDKWVRHEGE TMMKWVAEFQ AAAFQVEHRF YGSKEYSPIG  60
   61 DQTTASMKLL TIDQALADIK EFITQMNALY FKDDKPIWVT FGGSYPGSLS AFFRETYPEM 120
  121 TAGAVSSSSA VHVFVDYYEY AINTEKTYRT VSDSCGDVIK VAFQNLITKA YSGPDSRALL 180
  181 KQRFKLKSNL KICFPKESNQ ISYLIKKFQV DFSSVKSEPF KKIRHFSLCD NFDETKLSKS 240
  241 VQFFFQNVYG YFQGINQYTG DNRNNATRSG LGVPAACNLL NDKTIGDEIQ RVIAVMNLYD 300
  301 SWYKPSDSGC RPNNYTAFIQ AYSD

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 46.30103
Match: 1azwA
Description: Proline iminopeptidase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
hydrolase activity 2.48013881015789 bayes_pls_golite062009
catalytic activity 1.39629727416851 bayes_pls_golite062009
peptidase activity 1.12223067833053 bayes_pls_golite062009
peptidase activity, acting on L-amino acid peptides 0.84896705840223 bayes_pls_golite062009
hydrolase activity, acting on ester bonds 0.100880080935406 bayes_pls_golite062009

Predicted Domain #3
Region A:
Residues: [406-582]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TTMPDDDTIS TRSWIWQTCT ELGYYQTTDG GNGGIFGSTV PLDFFADQCI DLFGPEYTLD  60
   61 NTFKLVDQVR TKYGGADAYR GTNVCFPNGS FDPWQGLGHT ANITNNNVDS WLIDGTAHCA 120
  121 DMYPARDSDK QSLKDARVRI HGHLSRWLSD AQAIRTAGSS NISIFAAVCL VMFKILF

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle