YRC Public Data Repository - Protein Structure Prediction

Protein:	rsp-6
Organism:	Caenorhabditis elegans
Length:	179 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for rsp-6.

Description	E-value	Query Range	Subject Range
PABP_MAGGR - Polyadenylate-binding protein, cytoplasmic and nuclear OS=Magnaporthe grisea GN=PAB1 PE=3 SV=1 PABP_MAGO7 - Polyadenylate-binding protein, cytoplasmic and nuclear OS=Magnaporthe oryzae (strain 70-15 / ATCC MY...	120.0	[0..3]	[177..242]
gi\|73974132 - gi\|73974132\|ref\|XP_856753.1\| PREDICTED: similar to Polyadenylate-binding protein 1 (Poly(A)-binding ...	118.0	[0..3]	[146..191]
gi\|76689285 - gi\|76689285\|ref\|XP_881509.1\| PREDICTED: similar to poly(A) binding protein, cytoplasmic 4 isoform 2 ...	116.0	[0..3]	[139..191]
gi\|1082703, gi\|6... - gi\|693937\|emb\|CAA88401.1\| polyadenylate binding protein II [Homo sapiens], pir\|\|S52491 polyadenylate...	116.0	[0..3]	[146..166]
gi\|47217896 - gi\|47217896\|emb\|CAG05018.1\| unnamed protein product [Tetraodon nigroviridis]	115.0	[0..3]	[146..178]

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Predicted Domain #1

Region A:
Residues: [1-79]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDAKVYVGGL PSDATSQELE EIFDRFGRIR KVWVARRPPG FAFVEYDDVR DAEDAVRALD  60
   61 GSRICGVRAR VELSTGQRR

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	19.39794
Match:	2i2yA
Description:	No description for 2i2yA was found.

Predicted Domain #2

Region A:
Residues: [80-179]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GGGGRGGGFG GRGGGGRDRS PYRGDRGRSR SRSRDRGRDR SRDRSRDRSR DRSRDRSRER  60
   61 SRERERTRSR SRSPQERDRS HSKSRSRSRS RSRSRSASPH

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits