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View Structure Prediction Details

Protein: swd-2.2
Organism: Caenorhabditis elegans
Length: 326 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for swd-2.2.

Description E-value Query
Range
Subject
Range
gi|186464325, gi... - gi|23128981|ref|ZP_00110817.1| COG2319: FOG: WD40 repeat [Nostoc punctiforme PCC 73102], gi|18668187...
400.0 [0..3] [324..1191]

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Predicted Domain #1
Region A:
Residues: [1-326]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTMKEVEITA ESLAKLTPAK QPNDTTTRVN SLSYGLKGDH MIMSTDDDSM FLYDMNTGLR  60
   61 SRSVNSKKYG CSHVKFASDS MCALHGSTKV DNTIRYLSLT DNKYIRYFQG HDKLVTGINV 120
  121 SPMDDMFLSV AEDKTIRLWD LKTHNCIGLM NLSATPIATF DPEGLLFAAG LDNNIIKLYD 180
  181 LRSFDKGPFS SFGPLENEDN VEWTAMRFSP CGKYIMICTN SSQLLLVDAF TGLIKFTLEE 240
  241 HQNAQKIPLM ASFTPESSHI MVGSSDGYIY FYDVETGEIA LKTLAPNNQT CHIAEFSPQH 300
  301 FVAATADTKL TLWCASDELK AQAQQS

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Detection Method: PSI-BLAST
Confidence: 80.69897
Match: 2gnqA
Description: No description for 2gnqA was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle