YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: CE04040
Organism: Caenorhabditis elegans
Length: 321 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE04040.

Description E-value Query
Range
Subject
Range
gi|157769227 - gi|157769227|ref|XP_001676434.1| Hypothetical protein CBG14246 [Caenorhabditis briggsae AF16]
gi|39597764, gi|... - gi|39597764|emb|CAE68456.1| Hypothetical protein CBG14246 [Caenorhabditis briggsae], gi|187027769|em...
381.0 [0..8] [319..19]

Back

Predicted Domain #1
Region A:
Residues: [1-163]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFAPHTNIMS IARVLIIIAS ISVICITLFI SRPVTRESSI IIAPKTRDMR AEQIRLFALN  60
   61 AMVKANSHTL PPRSKNISAK NLCSRRMTCA PHNRRYETML KVSPKYKMVN CVVQKSMSTM 120
  121 MTGAMCYLYD EKAYADSGRT FDDEFSTRFC KNKNEFSSVN AVR

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [164-321]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DAYNISFVKT DWLFSMITRD PIDRFVSGYV DRCVRISQKN ETGQCNGCGL NMTCFIENEY  60
   61 KRLMEISFKR KTHRTMEDAH FFPQIWHCDL NEDLEFFEFI QYSNNPETTM MPQLEEMLKR 120
  121 QKVPSDSIRF IKNELLYKKS SHSTTGTPAS RFYRSRYS

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle