YRC Public Data Repository - Protein Structure Prediction

Protein:	CE03952
Organism:	Caenorhabditis elegans
Length:	154 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE03952.

Description	E-value	Query Range	Subject Range
FABG_THEMA - 3-oxoacyl-[acyl-carrier-protein] reductase FabG OS=Thermotoga maritima GN=fabG PE=3 SV=1 FABG_THEMA - 3-oxoacyl-[acyl-carrier-protein] reductase FabG OS=Thermotoga maritima (strain ATCC 43589 / MSB8 / D...	212.0	[0..1]	[154..76]
gi\|91184216, gi\|... - gi\|91217712\|ref\|ZP_01254669.1\| putative 3-oxoacyl-[acyl-carrier protein] reductase [Psychroflexus to...	204.0	[0..1]	[154..85]
gi\|148360785, gi... - gi\|148360785\|ref\|YP_001251992.1\| acetyoacetyl CoA reductase [Legionella pneumophila str. Corby], gi\|... gi\|53750374, gi\|... - gi\|54296589\|ref\|YP_122958.1\| hypothetical protein lpp0620 [Legionella pneumophila str. Paris], gi\|53...	199.0	[0..1]	[154..76]
gi\|146296617, gi... - gi\|82501013\|ref\|ZP_00886394.1\| 3-oxoacyl-(acyl-carrier-protein) reductase [Caldicellulosiruptor sacc...	199.0	[0..1]	[154..78]
gi\|52627913, gi\|... - gi\|52840802\|ref\|YP_094601.1\| acetyoacetyl CoA reductase [Legionella pneumophila subsp. pneumophila s...	199.0	[0..1]	[154..78]
gi\|89098688, gi\|... - gi\|89098688\|ref\|ZP_01171570.1\| beta-ketoacyl-acyl carrier protein reductase [Bacillus sp. NRRL B-149...	199.0	[0..2]	[154..78]
gi\|84361287 - gi\|84361287\|ref\|ZP_00985964.1\| COG1028: Dehydrogenases with different specificities (related to shor...	198.0	[0..3]	[154..2]
gi\|27262214 - gi\|27262214\|gb\|AAN87388.1\| 3-oxoacyl-[acyl-carrier protein] reductase [Heliobacillus mobilis]	198.0	[0..1]	[154..86]
gi\|255313843 - gi\|255313843\|ref\|ZP_05355426.1\| 3-oxoacyl-[acyl-carrier protein] reductase [Clostridium difficile QC... gi\|255516524 - gi\|255516524\|ref\|ZP_05384200.1\| 3-oxoacyl-[acyl-carrier protein] reductase [Clostridium difficile QC... gi\|255649624 - gi\|255649624\|ref\|ZP_05396526.1\| 3-oxoacyl-[acyl-carrier protein] reductase [Clostridium difficile QC... gi\|254974717 - gi\|254974717\|ref\|ZP_05271189.1\| 3-oxoacyl-[acyl-carrier protein] reductase [Clostridium difficile QC... gi\|255092105 - gi\|255092105\|ref\|ZP_05321583.1\| 3-oxoacyl-[acyl-carrier protein] reductase [Clostridium difficile CI... gi\|90575404, gi\|... - gi\|90575404\|ref\|ZP_01231888.1\| hypothetical protein CdifQ_02001165 [Clostridium difficile QCD-32g58]...	197.0	[0..1]	[153..78]
gi\|115250215, gi... - gi\|126698778\|ref\|YP_001087675.1\| 3-oxoacyl-[acyl-carrier protein] reductase [Clostridium difficile 6... gi\|255306086 - gi\|255306086\|ref\|ZP_05350258.1\| 3-oxoacyl-[acyl-carrier protein] reductase [Clostridium difficile AT... gi\|255100197 - gi\|255100197\|ref\|ZP_05329174.1\| 3-oxoacyl-[acyl-carrier protein] reductase [Clostridium difficile QC...	197.0	[0..1]	[153..78]

Back

Predicted Domain #1

Region A:
Residues: [1-154]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSGRFSGKDA IITGSSFEIG RATALLFAKE GEKSVIEMTQ KIHPHLAKTH GEIFNVSSIV  60
   61 ALKFGSGRGP YYPLAKAALD QYIRSAAIDL ISEGIRVNTV NPGVVATGFM EVATGLSSEQ 120
  121 SQTFYDNVGS NPSAIPCGYS GRPEQIAKAI AFLS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	40.154902
Match:	1xkqA
Description:	Crystal Structure of Short-Chain Dehydrogenase/Reductase of unknown Function from Caenorhabditis Elegans with Cofactor
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	1.26736023026862	bayes_pls_golite062009
oxidoreductase activity	0.68812524232244	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: