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View Structure Prediction Details

Protein: CE03726
Organism: Caenorhabditis elegans
Length: 308 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE03726.

Description E-value Query
Range
Subject
Range
gi|73999378 - gi|73999378|ref|XP_535071.2| PREDICTED: similar to transcription elongation factor A (SII) 1 [Canis ...
275.0 [0..2] [308..141]

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Predicted Domain #1
Region A:
Residues: [1-308]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSALEETQSL CKQVDDICNN GMESVEQCNK LLDQLSKIPM SIEIIQKTNI GIKVNMMRKK  60
   61 VTDDAVAKRA KNIIKDWKNV VDGKSKSQDD GGAPPAKKHR KESVEEAKPE KKKIEAPYKR 120
  121 PEPSSRPEIV AQFASASFPP KHLENDETRL KSAQLLLSAL RFGDMPQGTL DPEELAVQIE 180
  181 EKLYSVHRDT NKSYSAAVRS RIFNLRDKKN LALRENVLTG VVRAEKFATM TSEEMASAEI 240
  241 REMRDKFTKE AILEHQMSVQ QGTPSDMFKC GKCGKKNCTY TQLQTRSSDE PMTTFVFCLE 300
  301 CGNRWKFC

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 42.221849
Match: 1pqvS
Description: RNA polymerase II-TFIIS complex
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle