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View Structure Prediction Details

Protein: alh-13
Organism: Caenorhabditis elegans
Length: 800 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for alh-13.

Description E-value Query
Range
Subject
Range
gi|157770860 - gi|157770860|ref|XP_001677250.1| Hypothetical protein CBG00074 [Caenorhabditis briggsae AF16]
gi|39587984, gi|... - gi|39587984|emb|CAE57215.1| Hypothetical protein CBG00074 [Caenorhabditis briggsae], gi|187039237|em...
674.0 [0..1] [800..1]

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Predicted Domain #1
Region A:
Residues: [1-315]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFRATRCLRL PLRNSHINIL RPTQTELIKT RSSALAPYEK VSPITAVGAT PVGVGNGNYC  60
   61 TKTRQKHPLI NTRNDLKKAQ RVVVKLGSAV ITREDECGLA LGRLASIVEQ VSELQQSGRQ 120
  121 MLIVSSGAVA FGRQKLRQEL VMSMSMRQTL RGPSGMTADK RACAASGMPG LMSLYEQLFQ 180
  181 QYGITVAQVL LTKPDIDDDQ RRKNLQATIE SLLSLNIIPI VNANDAVAPD PKLNMHISDN 240
  241 DSLAARLSAE IEAELLIILS NVNGVYTGPP DLEGSRLLYT YVPSENSGVT FGANSKFGTG 300
  301 GMESKVTACV NALNN

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 56.69897
Match: 2j5tA
Description: No description for 2j5tA was found.

Predicted Domain #2
Region A:
Residues: [316-800]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GVTTVITNGL AQDAITDAVA GKKIGTMFCN TKGYEGPPIE EVAEKCRDAG RQLAALSNKE  60
   61 RGAMVRHLAA LLVDKEKYII EANQTDLANA KSAGLDPQLL NRLKMTPEKI QDLHAGLNTI 120
  121 ADSAETLVGR VLKKVKISEG LFLEQVTVPI GSLMVIFESR PDCLPQVASL AMASGNALLL 180
  181 KGGKEAEESN KALHALVQEA LGTHGFEMRD AVTLVRSRED VADLLQLKDL IDLIIPRGSS 240
  241 DLVRSMQEKS KGIPVLGHAE GVWHVYIDKD CDEQKAIQIV RDSKCDYPSA CNAAETILIH 300
  301 KDLATAPFFD SLCSMFKAEG VKLHAGPKLA ALLKFAPPPA ESMSFEYGSL ECTLEVVDNV 360
  361 EEAVAHIIRY GSGHTESIIT ENTNTAEHFL KHVDSACAFH NASTRFADGY RFGLGAEVGI 420
  421 STGRIHARGP VGVEGLLTTK WLLRGEGHLV EDFKNGKYSY LHENLNPSEV YRALDAAGEL 480
  481 KKATA

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 90.221849
Match: 2h5gA
Description: No description for 2h5gA was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle