YRC Public Data Repository - Protein Structure Prediction

Protein:	CE03683
Organism:	Caenorhabditis elegans
Length:	285 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE03683.

Description	E-value	Query Range	Subject Range
gi\|39597531, gi\|... - gi\|39597531\|emb\|CAE59761.1\| Hypothetical protein CBG03213 [Caenorhabditis briggsae], gi\|187036789\|em... gi\|157750840 - gi\|157750840\|ref\|XP_001679132.1\| Hypothetical protein CBG03213 [Caenorhabditis briggsae AF16]	494.0	[0..1]	[285..1]
gi\|55238292, gi\|... - gi\|58387335\|ref\|XP_315489.2\| AGAP005486-PA [Anopheles gambiae str. PEST], gi\|55238292\|gb\|EAA11140.2\|... AGAP005486-PA - mitochondrial ribosomal protein, L50\|protein_coding\|2L:16132080:16133099:-1\|gene:AGAP005486	263.0	[0..45]	[238..42]
gi\|220942778 - gi\|220942778\|gb\|ACL83932.1\| mRpL50-PA [synthetic construct] mRpL50-PA - The gene mitochondrial ribosomal protein L50 is referred to in FlyBase by the symbol Dmel\mRpL50 (CG...	229.0	[0..78]	[238..41]
gi\|195160805, gi... - gi\|195160805\|ref\|XP_002021264.1\| GL25235 [Drosophila persimilis], gi\|194118377\|gb\|EDW40420.1\| GL2523... gi\|54642220, gi\|... - gi\|54642220\|gb\|EAL30969.1\| GA21207 [Drosophila pseudoobscura pseudoobscura], gi\|125978855\|ref\|XP_001... gi\|54642220\|gb\|E... - GA21207-PA [Drosophila pseudoobscura], GA21207 [Drosophila pseudoobscura pseudoobscura]	208.0	[0..78]	[238..41]
gi\|157136422, gi... - gi\|157136422\|ref\|XP_001663749.1\| mitochondrial ribosomal protein, L50, putative [Aedes aegypti], gi\|...	203.0	[0..47]	[238..42]
gi\|157821947, gi... - gi\|34868383\|ref\|XP_342836.1\| PREDICTED: similar to mitochondrial ribosomal protein L50 [Rattus norve...	166.0	[0..89]	[195..58]
RM50_MOUSE - 39S ribosomal protein L50, mitochondrial OS=Mus musculus GN=Mrpl50 PE=1 SV=2	163.0	[0..89]	[195..58]

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Predicted Domain #1

Region A:
Residues: [1-127]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHRSFPRLVR SQGNLLKGMF GKSGEKEAVK QLTLEEQESL RKTLPSIRAR ESTQVTASAD  60
   61 SVTEFDDDLL TMSRIDTDAI RARGFLKYTQ NYVPGVDVKN QVLEAASSCL RSAGVKSENV 120
  121 DQYKFVE

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [128-200]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GDNSVKFELL NRLGKSIEHW PTNGKLLHLE TVADVVEFYQ TPVKNVTKYT EMARDENKPK  60
   61 NVSIMEHAAR FHP

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [201-285]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EDTHMYHGGI TAFPGSGGEV LSLRQKRLLR QFQPKKEWFD YDDQTFDYTR PDKNMPWDPE  60
   61 VANQMDKYTD KRYNLKTKQF TRIRQ

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits