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View Structure Prediction Details

Protein: rol-6
Organism: Caenorhabditis elegans
Length: 348 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for rol-6.

Description E-value Query
Range
Subject
Range
gi|113461768, gi... - gi|113461768|ref|YP_719837.1| large adhesin [Haemophilus somnus 129PT], gi|112823811|gb|ABI25900.1| ...
320.0 [0..35] [348..1416]

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Predicted Domain #1
Region A:
Residues: [1-348]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTLTTATSGA IVFSGATLLV SLFAAASLYS QVSNIWNELD AEIANFRSLT EDMWVDMVKL  60
   61 GAGTASNRVR RQQYGGYGAT GVQPPAPTPN PYGGYGASQP APPEKFPDGI PNGGNQPKFP 120
  121 GGGFPDGPFP NGGGPRGGNQ CQCTVENSCP PGPAGPEGEE GPDGHDGQDG VPGFDGKDAE 180
  181 DVQNTPPTGC FTCPQGPLGP QGPNGAPGLR GMRGARGQPG RPGRDGNPGM PGDCGPPGAP 240
  241 GSDGKPGSPG GKGDDGERPL GRPGPRGPPG EAGPEGPQGP TGRDAYPGQS GPQGEPGLQG 300
  301 YGGAAGEDGP EGPPGAPGLP GKDAEYCKCP GREGDAGRSA RRHRKFQL

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 35.522879
Match: 1y0fA
Description: No description for 1y0fA was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle