YRC Public Data Repository - Protein Structure Prediction

Protein:	CE03511
Organism:	Caenorhabditis elegans
Length:	279 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE03511.

Description	E-value	Query Range	Subject Range
gi\|67849921, gi\|... - gi\|67916119\|ref\|ZP_00509840.1\| Delta 1-pyrroline-5-carboxylate reductase [Clostridium thermocellum A... gi\|196251994, gi... - gi\|196251994\|ref\|ZP_03150658.1\| pyrroline-5-carboxylate reductase [Clostridium thermocellum DSM 4150...	211.0	[0..2]	[270..4]
gi\|70802403, gi\|... - gi\|70802403\|gb\|AAZ12308.1\| pyrroline-5-carboxylate reductase, putative [Trypanosoma brucei], gi\|6217... gi\|71749908, gi\|... - gi\|72391146\|ref\|XP_845867.1\| pyrroline-5-carboxylate reductase [Trypanosoma brucei TREU927], gi\|7174...	206.0	[0..1]	[269..175]
gi\|47096586, gi\|... - gi\|47096586\|ref\|ZP_00234175.1\| pyrroline-5-carboxylate reductase [Listeria monocytogenes str. 1/2a F... gi\|254913642, gi... - gi\|254913642\|ref\|ZP_05263654.1\| pyrroline-5-carboxylate reductase [Listeria monocytogenes J2818], gi... gi\|126942172, gi... - gi\|254900657\|ref\|ZP_05260581.1\| pyrroline-5-carboxylate reductase [Listeria monocytogenes J0161], gi... gi\|133733724, gi... - gi\|254938027\|ref\|ZP_05269724.1\| pyrroline-5-carboxylate reductase [Listeria monocytogenes F6900], gi...	206.0	[0..2]	[265..3]
gi\|47939971, gi\|... - gi\|47939971\|gb\|AAH72211.1\| MGC81282 protein [Xenopus laevis], gi\|148226694\|ref\|NP_001085088.1\| hypot...	206.0	[0..1]	[279..1]
gi\|254830607, gi... - gi\|254830607\|ref\|ZP_05235262.1\| pyrroline-5-carboxylate reductase [Listeria monocytogenes 10403S], g... gi\|255030311 - gi\|255030311\|ref\|ZP_05302262.1\| pyrroline-5-carboxylate reductase [Listeria monocytogenes LO28] gi\|153173206, gi... - gi\|254828971\|ref\|ZP_05233658.1\| pyrroline-5-carboxylate reductase [Listeria monocytogenes FSL N3-165... gi\|25284805, gi\|... - pir\|\|AE1124 1-pyrroline-5-carboxylate reductase (ProC) homolog lmo0396 [imported] - Listeria monocyt... gi\|16802441 - gi\|16802441\|ref\|NP_463926.1\| pyrroline-5-carboxylate reductase [Listeria monocytogenes EGD-e] gi\|224502310 - gi\|224502310\|ref\|ZP_03670617.1\| pyrroline-5-carboxylate reductase [Listeria monocytogenes FSL R2-561... gi\|224500018 - gi\|224500018\|ref\|ZP_03668367.1\| pyrroline-5-carboxylate reductase [Listeria monocytogenes Finland 19... gi\|255025378 - gi\|255025378\|ref\|ZP_05297364.1\| pyrroline-5-carboxylate reductase [Listeria monocytogenes FSL J2-003...	205.0	[0..2]	[265..3]
gi\|63101898, gi\|... - gi\|66472516\|ref\|NP_001018454.1\| zgc:110655 [Danio rerio], gi\|63101898\|gb\|AAH95354.1\| Zgc:110655 [Dan...	205.0	[0..1]	[279..1]
gi\|89159827, gi\|... - gi\|89210565\|ref\|ZP_01188953.1\| Delta 1-pyrroline-5-carboxylate reductase [Halothermothrix orenii H 1...	205.0	[0..1]	[268..1]
gi\|133736321, gi... - gi\|254932690\|ref\|ZP_05266049.1\| pyrroline-5-carboxylate reductase [Listeria monocytogenes HPB2262], ... gi\|47020208, gi\|... - gi\|47091531\|ref\|ZP_00229328.1\| pyrroline-5-carboxylate reductase [Listeria monocytogenes str. 4b H78... gi\|46906627, gi\|... - gi\|46906627\|ref\|YP_013016.1\| pyrroline-5-carboxylate reductase [Listeria monocytogenes str. 4b F2365...	204.0	[0..2]	[265..3]
gi\|28204459, gi\|... - gi\|28212016\|ref\|NP_782960.1\| pyrroline-5-carboxylate reductase [Clostridium tetani E88], gi\|28204459...	204.0	[0..3]	[268..5]
gi\|89268968, gi\|... - gi\|89271878\|emb\|CAJ81362.1\| pyrroline-5-carboxylate reductase family, member 2 [Xenopus tropicalis],...	204.0	[0..1]	[279..1]

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Predicted Domain #1

Region A:
Residues: [1-279]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKIGFIGAGK MAQALARGLI NSGRITADNI IASSPKRDEV FLDQCKALGL NTTHDNAEVV  60
   61 QKSDVVFLAV KPVHVSKVAS EIAPALSKEH LVVSIALGIT IRNIESLLPT KSRVVRVMPN 120
  121 TPSVVRAGAS AFAMGSACRD GDAETVEKLL STVGFAVEVP EIHIDPVTGL SGSGPSYMFA 180
  181 VIEGLADGGV KVGLPRDLAL KLAAYTLLGA AKMVLETGIH PAQLKDDVQS PAGSSVYGMH 240
  241 KLESGGLKGV LMDAVEAATN RSRATGDKAL PRDFRNTEM

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	50.69897
Match:	2izzA
Description:	No description for 2izzA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits