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View Structure Prediction Details

Protein: lact-4
Organism: Caenorhabditis elegans
Length: 429 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for lact-4.

Description E-value Query
Range
Subject
Range
gi|67776, gi|344... - pir||PNKBM beta-lactamase (EC 3.5.2.6) precursor - Enterobacter cloacae (strain MNH1), gi|34495355|g...
280.0 [0..1] [420..1]

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Predicted Domain #1
Region A:
Residues: [1-429]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLEKFTITHF LIFLLGFALV IWNSDSGSKQ TEIHVDGEFD PKWKHVADMF RKNLEQNWER  60
   61 SGAAFVVYHK GQKVVDIWGG YSDRESQRKW TKTTLSVAFS CSKAIGAIVI AKLIDEQRLT 120
  121 YDDLVIKHWP EFGANGKQNV TIRWLLTHKA GLAYTDHPIT LEIAKNPNEI DRVLEQQVPN 180
  181 WPPGTKVGYH AVTHGWLVDA IVRRVDKKKR TVGQYFKEEI ADKHNIDFYI GLPLSEQHRV 240
  241 SRIENPNFQN VLDEILYSPR DFDVIRFIKD KINNGTLSKT TVSTPFVQFV GAMTLNNPDL 300
  301 HRLEQAAVLG IGTARAMAEV FELLRNGKIV SDDVKRQMFF ENYEMSEDYI SGAKVPRGQG 360
  361 FMLKEFEHNG NLVKMYGHSG YGGQNIRTDF DHEITIAYLS NGLKVGFGDT ARTYKRLLAA 420
  421 VYDTYFEIK

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 72.0
Match: 1y54A
Description: Crystal structure of the native class C beta-lactamase from Enterobacter cloacae 908R complexed with BRL42715
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle