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View Structure Prediction Details

Protein: bcat-1
Organism: Caenorhabditis elegans
Length: 415 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for bcat-1.

Description E-value Query
Range
Subject
Range
gi|39587969, gi|... - gi|39587969|emb|CAE57200.1| Hypothetical protein CBG00050 [Caenorhabditis briggsae], gi|187039222|em...
gi|157770830 - gi|157770830|ref|XP_001677235.1| Hypothetical protein CBG00050 [Caenorhabditis briggsae AF16]
407.0 [0..1] [415..1]

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Predicted Domain #1
Region A:
Residues: [1-415]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPAILSRVAP RTFNLVGSRL MASAARLETV PREEIHKEYD RKKTFYHRDL EIQLAGPTQL  60
   61 KTKPLDPTKL KFGHTYADYM MTCDWDAERG WHHPKIEPIG ELKIHPGAKV LHYASELFEG 120
  121 MKAYRGIDNK IRMFRPEMNM ARMKRTALRA ALPDFDSEEM INVLTELLRL DQEWVPNSDV 180
  181 CSLYLRPTLI GTDPTLGVGC ATEAKMFVIT GPVGAYYSTG FQPVSLLADS RFIRAFPGGV 240
  241 GAYKMGCNYA PTIWVGKEAA SKNCQQVLWL YGENEDLTEV GTMNIFLFWK NEEGDMELIT 300
  301 PPLHRGLILP GVTRDSLLEL GREWGEYKVT ERTLNMEEVK KALSEKRLYE MFGSGTACVV 360
  361 SPVGKILYHN KVTDEYEELH IPTMSSKFGV MQKFYNTIND IQYGRIIKDG WMRDI

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 101.0
Match: 2cogA
Description: Crystal structure of oxidized human cytosolic branched-chain aminotransferase complexed with 4-methylvalerate
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle