YRC Public Data Repository - Protein Structure Prediction

Protein:	taf-7.1
Organism:	Caenorhabditis elegans
Length:	254 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for taf-7.1.

Description	E-value	Query Range	Subject Range
gi\|26344495 - gi\|26344495\|dbj\|BAC35898.1\| unnamed protein product [Mus musculus]	255.0	[0..13]	[254..2]
gi\|89266792 - gi\|89266792\|emb\|CAJ83775.1\| TAF7 RNA polymerase II, TATA box binding protein (TBP)-associated factor...	247.0	[0..13]	[225..9]
gi\|50745656 - gi\|50745656\|ref\|XP_420187.1\| PREDICTED: similar to transcription factor IID [Gallus gallus]	247.0	[0..13]	[243..2]
TAF7_CRIGR - Transcription initiation factor TFIID subunit 7 OS=Cricetulus griseus GN=TAF7 PE=1 SV=1	245.0	[0..13]	[254..2]
gi\|149017311, gi... - gi\|34878802\|ref\|XP_226031.2\| PREDICTED: similar to Transcription initiation factor TFIID subunit 7 (...	245.0	[0..13]	[254..2]
gi\|114602327 - gi\|114602327\|ref\|XP_001146874.1\| PREDICTED: similar to transcription factor IID isoform 1 [Pan trogl...	243.0	[0..13]	[226..2]
gi\|76779785 - gi\|76779785\|gb\|AAI06255.1\| MGC78979 protein [Xenopus laevis]	242.0	[0..13]	[245..9]

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Predicted Domain #1

Region A:
Residues: [1-254]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSFDQPISVN LKVAKQHEDN EEWEEHLILR VPPDVVNRME KAVNGEIDAE ELGINFQEDN  60
   61 RTVQIRLGNQ ILPAKILDLP TINEVHKTLD NSTLYKVTDV SQMIICEGAM PIPKAERKKL 120
  121 NPEGIENREP KIEVEGSGVE NKTNVQSKTA RQLAKEKVKE YHYPHGITPP MKNAKKRRFR 180
  181 KKKEKKTMAV EEIEIELKRL LRSDLEAQSV RWKVVDDDET NPEDEDIEVY DNDDGSDLDK 240
  241 DDKDLFLSDD EDTL

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	114.920819
Match:	PF04658.4
Description:	No description for PF04658.4 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits