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View Structure Prediction Details

Protein: CE03378
Organism: Caenorhabditis elegans
Length: 655 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE03378.

Description E-value Query
Range
Subject
Range
gi|47215105 - gi|47215105|emb|CAF98179.1| unnamed protein product [Tetraodon nigroviridis]
627.0 [0..24] [655..527]

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Predicted Domain #1
Region A:
Residues: [1-70]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKSLLFSILL IYLIQLVRSE ECTDKHIHCF FWSQEGECEV NPRWMKKHCQ KACGTCSLTS  60
   61 PTPLTRQQDV 

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [71-655]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PTARTFDDQQ DRQFLPSRPS SIPEGCNSVM TVEAETRRIF SSGQLTARFR QQMCAEEQVA  60
   61 PDCSINQCFH KKYRSMDGTC NNLQNPVKGA AFTAFTRLMP AAYDDGFNTL VSASRRNRPN 120
  121 PREVSVFLLS SERSLPGHVN SLLMLFGQFV SHDITSNAAQ NFCGCQNSGP MCASIFAPPS 180
  181 DRSRRCIPFT RSFPICGTGQ FGRVREQLNM NTAAIDASLI YGSEAITARS LRFAAMLRTS 240
  241 MIGGRMFPPN TNPGSLTAGD GRAILFVGLA ALHTSFLRLH NNVAARLQNM NRHWNADRIF 300
  301 QESRKIVGGI VQVITYQEFV PELIGDASKT ILGAYNGYNP NVEIGVLNEF AAGAYRLHGM 360
  361 IQETYPLVNS QFQEVNRYRF IDGVNNINHV LNNIDAIYRG MMTVPVRSPQ RLTTSVTERL 420
  421 FGGSVDMAAV NIQRGRDHGL RSYNDYRRFC NLRPITSFND WPEVPDENVR QRIGQLYRTP 480
  481 DDLDFYVGGI LEQPAAGSLL GATFACVIGK QFERLRDGDR FYYENPGVFT SPQLAELKRT 540
  541 TLSWVLCQTG DNMVRVGRRA FDIENGSRAV PCSSITGLNL EAWRE

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 149.0
Match: 2ikcA
Description: No description for 2ikcA was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle