| Protein: | nhr-25 |
| Organism: | Caenorhabditis elegans |
| Length: | 572 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for nhr-25.
| Description | E-value | Query Range |
Subject Range |
|
|
266.0 | [0..7] | [572..3] |
|
Region A: Residues: [1-163] |
1 11 21 31 41 51
| | | | | |
1 MTDVERMVLR PNHEGEMCPV CGDRVSGYHY GLLTCESCKG FFKRTVQNKK QYQCSAEANC 60
61 HVDRTCRKRC PSCRFQKCLT MGMKMEAVRA DRMRGGRNKF GSFYKKDRAH RMQRNAMRVS 120
121 TVQVPAVLGA QSQAQTFYQP PEHQVSSSTT DQNNQINYFD QTK
|
| Detection Method: |  |
| Confidence: | 25.39794 |
| Match: | 2a66A |
| Description: | Human Liver Receptor Homologue DNA-Binding Domain (hLRH-1 DBD) in Complex with dsDNA from the hCYP7A1 Promoter |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [164-230] |
1 11 21 31 41 51
| | | | | |
1 IKTEYIKTEY DAHLQSPTLS SSTNQQLSVS DFIMRPGYLV DPQDSLAVLL GSTIDDPLLR 60
61 HTFPAAY
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [231-572] |
1 11 21 31 41 51
| | | | | |
1 QLNEVKQEPF DYSEQFIHHS LHDYPTYTSN TTNYATMMPM TTVSSTQSLV TSTSSTTTGR 60
61 MTEASSTSPI LPLCPAPTEK TVDHFYNSSI AEMCKTLPDD AQIARIFTSV KGTSKPEKHA 120
121 FSIQVAEENL KDIVIWAKND QLFSKLSLDD QMILLQTSWT TVHIVDITNA MVHGNLLSQY 180
181 KMSNGDEVPV GLVALLGNQT FVSSWNDVVI RLRNMGFTNF DYCAFRFLAL FDQSMDSFPA 240
241 VSTARSRVLQ SWREVRCTTA FLEIFEQIRR LAYDSLRYLW NLHSNCPTNW EQFFPEASLV 300
301 LEMIRTTVNR SASSSVTAIT QVPAIQLPTP QATYTAVPYM AS
|
| Detection Method: | |
| Confidence: | 30.69897 |
| Match: | 1z5xE |
| Description: | hemipteran ecdysone receptor ligand-binding domain complexed with ponasterone A |
Matching Structure (courtesy of the PDB): |
|
