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View Structure Prediction Details

Protein: ptp-2
Organism: Caenorhabditis elegans
Length: 668 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ptp-2.

Description E-value Query
Range
Subject
Range
gi|39596994, gi|... - gi|39596994|emb|CAE59221.1| Hypothetical protein CBG02539 [Caenorhabditis briggsae], gi|187037328|em...
gi|157751914 - gi|157751914|ref|XP_001679669.1| Hypothetical protein CBG02539 [Caenorhabditis briggsae AF16]
385.0 [0..1] [668..1]

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Predicted Domain #1
Region A:
Residues: [1-587]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPRLALRQYN FYYRVNGEKA EELLKEYGED GDFLLRYSES NPQNFSISVR VAEDKILHIK  60
   61 VTKYESDMLS IFEDERTTPN QFGSITELAE FYMEFPEKLR EKNGLFLELK KPVYVPYHLE 120
  121 ACAEEQRRTQ LYRWWHGNLP ASSANKLLQT EKNGTYLLRA SQHIPGALVI SAKTEGQVVH 180
  181 LTIYQDPSTG RFNIDGDRTK FQSAWLLIDS YSKNPIVEKG EASRVLYLEE PLFNTFIEAD 240
  241 LFVDRFEIIR RPINPRESME KTGISEEFDR LSQEALPAEQ YLSKREGRRP VNAEKNRYKN 300
  301 IVPFDHTRVI LTDRPNTPGS DYINASYVRF ENSQRTKNVT FACEKSFIAT QGCLETTISD 360
  361 FWSMVWQENS RVIVMPTMEN ERKEKCARYW PAEVNKPEVH GDISLTCTIE RKVQRAVSDE 420
  421 VKAELEQEKT NRIAKGLVPE AELNGDGISY ILRTLVMKKG KDTREIRQLQ YLTWPDHGCP 480
  481 LHPYAVLNFL EDVDREYDYF NAQPIAASLP QGPIVVHCSA GIGRTGTVLV LDALLNQVKK 540
  541 VGLLCPMDVY KMVKYVRTYR SGLVQTEQQY QFLYKALAFY LKNNNPY

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 96.522879
Match: 2b3oA
Description: Crystal structure of human tyrosine phosphatase SHP-1
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [588-668]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PVKSFIDGDT DAFDFPRRLR PTPNASRPSS ARQVTSSRPS SSASSRTSHS RPRTGPQAEP  60
   61 IFERSTSSTS SSSTLLKSTK K

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 89.69897
Match: 2fh7A
Description: Crystal structure of the phosphatase domains of human PTP SIGMA
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle