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View Structure Prediction Details

Protein: gpd-1
Organism: Caenorhabditis elegans
Length: 341 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gpd-1.

Description E-value Query
Range
Subject
Range
gi|62318276 - gi|62318276|dbj|BAD93764.1| Glyceraldehyde-3-phosphate dehydrogenase [Meriones unguiculatus]
453.0 [0..3] [340..1]

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Predicted Domain #1
Region A:
Residues: [1-341]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSKANVGING FGRIGRLVLR AAVEKDTVQV VAVNDPFITI DYMVYLFKYD STHGQFKGTV  60
   61 TYDGDFLIVQ KDGKSSHKIK VFNSKDPAAI AWGSVKADFV VESTGVFTTK EKASAHLQGG 120
  121 AKKVIISAPS ADAPMYVVGV NHEKYDASND HVVSNASCTT NCLAPLAKVI NDNFGIIEGL 180
  181 MTTVHAVTAT QKTVDGPSGK LWRDGRGAGQ NIIPASTGAA KAVGKVIPEL NGKLTGMAFR 240
  241 VPTPDVSVVD LTVRLEKPAS MDDIKKVVKA AADGPMKGIL AYTEDQVVST DFVSDPHSSI 300
  301 FDAGACISLN PNFVKLVSWY DNEYGYSNRV VDLIGYIATR G

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 127.0
Match: 1u8fO
Description: Crystal Structure Of Human Placental Glyceraldehyde-3-Phosphate Dehydrogenase At 1.75 Resolution
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle