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View Structure Prediction Details

Protein: lact-3
Organism: Caenorhabditis elegans
Length: 431 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for lact-3.

Description E-value Query
Range
Subject
Range
gi|4827075 - gi|4827075|gb|AAC45086.2| beta-lactamase ACT-1 [Klebsiella pneumoniae]
282.0 [0..6] [419..2]

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Predicted Domain #1
Region A:
Residues: [1-431]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQQFSLLFKL FLATVLLSVT YRFVCDRLYS NHKSDVSGFV DERFEKVREV FKKNFENGWE  60
   61 IEGSAFAVFV DGKKVVDLWG GYADKQAARK WAEDTITVTF STTKAAASLA VALLYEQGKL 120
  121 RYDDPVSKYW PGFGTHGRDN VTINMALSHM SGMAWFDTPI TEEIAADHEK MRQIIEEEEP 180
  181 KWAPGTKTGY HAYTFGWLVD QIVRHTDDQK RGIGQFFREE IATKLDVDYH IGLPVSEQHR 240
  241 VARISTPNML NRLDEMWTDV RVVKYMKSLF KLMTDHPLSH IVKNPSWLEA VSRCTINNPD 300
  301 YHRLEQAAAL GMGNARSLAS LFDKVNRGKL LNQATLNTIS KPFVNESDFI FDDTVAKGHG 360
  361 FFHLPIHRAG TQFGFGHTGH GCQMVITDLK NRVTIAYVTN GLKTGLYDLC RTYWGLQTSV 420
  421 YDVIEQINIQ S

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 70.0
Match: 1y54A
Description: Crystal structure of the native class C beta-lactamase from Enterobacter cloacae 908R complexed with BRL42715
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle