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View Structure Prediction Details

Protein: ram-2
Organism: Caenorhabditis elegans
Length: 306 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ram-2.

Description E-value Query
Range
Subject
Range
gi|113461768, gi... - gi|113461768|ref|YP_719837.1| large adhesin [Haemophilus somnus 129PT], gi|112823811|gb|ABI25900.1| ...
246.0 [0..64] [304..1492]

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Predicted Domain #1
Region A:
Residues: [1-306]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSADNEKKL WVEAESLRKV AFFGICISTV ATLTAIVAIP LLYNYMQHVQ STLQTEVDFC  60
   61 KHRTNGLFDQ YERMQQLKGV RGKLIVKRQA GYDAPADAAV QATTQSSGGS CCSCKAGASG 120
  121 PPGPPGTDGS DGKDGLSGPD GQPGADADPE ATPSEADFCF DCPAGPPGPA GNPGPKGPSG 180
  181 NAGADGQPGA PGNAGAAGAP GAPGPAGPDG QPGSTGQDGA PGVVEEVAVP AGPAGAPGPA 240
  241 GAPGADGAAG APGQPGQDGP QGPAGDAGSD GAAGQPGAAG EQGPAGEPGA GGGCDHCPPP 300
  301 RTAPGY

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 28.69897
Match: 1y0fB
Description: No description for 1y0fB was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle