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View Structure Prediction Details

Protein: sqt-1
Organism: Caenorhabditis elegans
Length: 324 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for sqt-1.

Description E-value Query
Range
Subject
Range
gi|113461768, gi... - gi|113461768|ref|YP_719837.1| large adhesin [Haemophilus somnus 129PT], gi|112823811|gb|ABI25900.1| ...
315.0 [0..24] [322..1443]

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Predicted Domain #1
Region A:
Residues: [1-324]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSVKLACYVT ASVTVATLMV CFMTMSTIYS EVDGFREKLD TEMNVFRQST NGLWKDIVVI  60
   61 GRSSKRVRRQ YEETNATPTP HADGSPSAPP GQPPAVPPVF NQPKTPNGAN GNGPTCNCNA 120
  121 DNKCPAGPSG PKGVPGVPGL DGVPGLDGVP GVGADDIAPQ RESVGCFTCP QGPVGPPGAL 180
  181 GRPGPRGLPG PRGQNGNPGR DGQPGHPGEQ GSSGQIGKIG EPGPPGEKGR DAEHPIGRPG 240
  241 PKGPRGDQGP TGPAGQNGLH GPPGEPGTVG PEGPSGKQGR QGPDGTQGET GPDGRPGKDA 300
  301 EYCQCPDKSP PSEAVNANRG YRNI

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 36.30103
Match: 1y0fB
Description: No description for 1y0fB was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle