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View Structure Prediction Details

Protein: CE01947
Organism: Caenorhabditis elegans
Length: 140 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE01947.

Description E-value Query
Range
Subject
Range
gi|50759023 - gi|50759023|ref|XP_425704.1| PREDICTED: similar to delayed rectifier potassium channel Kv2.1 [Gallus...
139.0 [0..3] [137..21]
KCB1_MOUSE, KCNB... - Potassium voltage-gated channel subfamily B member 1 OS=Mus musculus GN=Kcnb1 PE=1 SV=1, (Q03717) Po...
137.0 [0..5] [137..24]
gi|203396, gi|16... - gi|92624|pir||JH0595 potassium channel protein cdrK - rat, gi|203396|gb|AAA40905.1| potassium channe...
137.0 [0..5] [137..28]
gi|1546839 - gi|1546839|gb|AAB08433.1| delayed rectifier potassium channel protein [Homo sapiens]
136.0 [0..5] [137..28]
KCNB2_BOVIN - Potassium voltage-gated channel subfamily B member 2 OS=Bos taurus GN=KCNB2 PE=2 SV=1
136.0 [0..5] [137..28]

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Predicted Domain #1
Region A:
Residues: [1-140]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVNELSFNCE DAWLNLFVGG EMYPVQVKTL MNPTTCGSYF RDVVKVSDAA IKVRGVQWDT  60
   61 APNHIKFRVD IDRDGVLFRH VLQYLRNGKL TSLPDDIFTL ESLVAEAEFF GLEKYREMLK 120
  121 KKLWKLTGKR QYYACYEDSD 

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 28.154902
Match: 2a79B
Description: Mammalian Shaker Kv1.2 potassium channel- beta subunit complex
Matching Structure (courtesy of the PDB):

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