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View Structure Prediction Details

Protein: CE01846
Organism: Caenorhabditis elegans
Length: 578 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE01846.

Description E-value Query
Range
Subject
Range
gi|113475191, gi... - gi|113475191|ref|YP_721252.1| glycosyl transferase family protein [Trichodesmium erythraeum IMS101],...
281.0 [0..10] [570..51]

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Predicted Domain #1
Region A:
Residues: [1-518]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGEIERPRSL SRITVHSDAE YLDAYDHVTY SNSLELLDTI AETQITLNLF MNNKFELAEE  60
   61 RMAELYDKSM YHSMGYTCIL FIKAVMTVNK QDMEKAAEAS KLSCEIIEKF RERRSIKETI 120
  121 FGASAKGKKM TDEELHAELC YAQSLLIRAM LTFFHDDNFA SFIKGALNIR TCYQTYRYCE 180
  181 KLMNEPSVWV GRNKKVQEQF ESGTRMGLGT FSLMLSVLPS KVLRLLEVVG FSGDKVAGMR 240
  241 DLHHVASMTG TLCSPLAKMV LLTWHLIISF VLGTGQPDLE VCKRLMPGLT HLWPRGAIML 300
  301 FMKARLLLIS GDIEAAIHYF NMSIESQDVY KQFHHGCYWE LLFAHGYQRR WSHSANYARL 360
  361 LMKESKWSRC VYTYLLCIFF AADETVEEGR RNETINALAG KVDGLRIRIA GKSIPVEKYC 420
  421 GRKAKRFTTT NSLLFAHYEF IYFWNGFDIF GKNSKMVRGI VEDMDRVWEM KKSTCDIDDY 480
  481 CLYYFLKGVA LRHLSLHAQA EECFKIVLER ESSIKSFT

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 26.0
Match: 2gw1A
Description: No description for 2gw1A was found.

Predicted Domain #2
Region A:
Residues: [519-578]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 YLPPNATYEL AMLRISEQQF MEAQTLLDKA RAYKSYSLEN KLHFRIHSAM GTMGCRTPMM  60
   61 

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 10.522879
Match: 1ihgA
Description: Cyclophilin 40; Cyclophilin 40 isomerase domain
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle