YRC Public Data Repository - Protein Structure Prediction

Protein:	CE01826
Organism:	Caenorhabditis elegans
Length:	213 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE01826.

Description	E-value	Query Range	Subject Range
gi\|47214332 - gi\|47214332\|emb\|CAG00841.1\| unnamed protein product [Tetraodon nigroviridis]	373.0	[0..1]	[201..1]
gi\|76616893 - gi\|76616893\|ref\|XP_586702.2\| PREDICTED: similar to ER lumen protein retaining receptor 3 (KDEL recep...	357.0	[0..1]	[213..199]
gi\|109482565 - gi\|109482565\|ref\|XP_001076531.1\| PREDICTED: similar to ER lumen protein retaining receptor 3 (KDEL r...	347.0	[0..1]	[213..340]
gi\|27525270, gi\|... - gi\|74096067\|ref\|NP_001027671.1\| KDEL receptor [Ciona intestinalis], gi\|27525270\|emb\|CAC81951.1\| KDEL...	303.0	[0..1]	[212..1]
ERD22_CHICK - ER lumen protein-retaining receptor 2 OS=Gallus gallus GN=KDELR2 PE=2 SV=1	301.0	[0..1]	[212..1]
ERD21_XENTR - ER lumen protein-retaining receptor 1 OS=Xenopus tropicalis GN=kdelr1 PE=2 SV=1	300.0	[0..1]	[212..1]
ERD22_DANRE - ER lumen protein-retaining receptor 2 OS=Danio rerio GN=kdelr2 PE=2 SV=1	299.0	[0..1]	[212..1]
gi\|73958020 - gi\|73958020\|ref\|XP_850429.1\| PREDICTED: similar to ER lumen protein retaining receptor 2 (KDEL recep... ERD22_MOUSE - ER lumen protein-retaining receptor 2 OS=Mus musculus GN=Kdelr2 PE=1 SV=1 ERD22_BOVIN - ER lumen protein-retaining receptor 2 OS=Bos taurus GN=KDELR2 PE=2 SV=1 ERD22_RAT - ER lumen protein-retaining receptor 2 OS=Rattus norvegicus GN=Kdelr2 PE=2 SV=1 gi\|53734577, gi\|... - gb\|AAH86053.1\| Unknown (protein for MGC:98369) [Xenopus laevis], gb\|AAH83938.1\| Unknown (protein fo... tr\|G1SJ08\|G1SJ08... - pep:novel scaffold:oryCun2:GL018931:94102:114335:1 gene:ENSOCUG00000003101 transcript:ENSOCUT0000000...	298.0	[0..1]	[212..1]

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Predicted Domain #1

Region A:
Residues: [1-112]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNIFRISADM SHLLAIIILL LKIWKSRSCS GISARSQILF ALVFTARYLD LFSTYISLYN  60
   61 TTMKITFLAA TYATVYLMFF KFRSTYMRES DTFRVELLIV PAAILALLIN HD

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [113-213]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 FAPFELLWTF SIYLEAVAIL PQLFLLQSTG SAEVITAHYL FALGSYRALY IFNWIYRYYT  60
   61 EDYFDPIVVV AGIVQTVLYA DFFYLYVTRV VQTRKGMELP I

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits