YRC Public Data Repository - Protein Structure Prediction

Protein:	trx-1
Organism:	Caenorhabditis elegans
Length:	115 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for trx-1.

Description	E-value	Query Range	Subject Range
gi\|95928472, gi\|... - gi\|95928472\|ref\|ZP_01311219.1\| thioredoxin [Desulfuromonas acetoxidans DSM 684], gi\|95135262\|gb\|EAT1...	135.0	[0..7]	[113..3]
gi\|32477354, gi\|... - gi\|32477354\|ref\|NP_870348.1\| thioredoxin 1 [Rhodopirellula baltica SH 1], gi\|32447905\|emb\|CAD77425.1...	134.0	[0..7]	[113..3]
gi\|160872103, gi... - gi\|94494048\|ref\|ZP_01301251.1\| hypothetical protein Rgryl_01000578 [Rickettsiella grylli], gi\|160872...	133.0	[0..6]	[111..2]
gi\|76812139, gi\|... - gi\|76812139\|ref\|YP_333769.1\| thioredoxin 1 [Burkholderia pseudomallei 1710b], gi\|76581592\|gb\|ABA5106...	132.0	[0..7]	[110..40]
gi\|83757761, gi\|... - gi\|83816367\|ref\|YP_446755.1\| thioredoxin [Salinibacter ruber DSM 13855], gi\|83757761\|gb\|ABC45874.1\| ...	132.0	[0..5]	[115..2]
gi\|77546741, gi\|... - gi\|77920658\|ref\|YP_358473.1\| thioredoxin [Pelobacter carbinolicus DSM 2380], gi\|77546741\|gb\|ABA90303...	132.0	[0..7]	[113..3]
gi\|126097342, gi... - gi\|126208550\|ref\|YP_001053775.1\| thioredoxin [Actinobacillus pleuropneumoniae L20], gi\|126097342\|gb\|... gi\|32035159 - gi\|32035159\|ref\|ZP_00135199.1\| COG0526: Thiol-disulfide isomerase and thioredoxins [Actinobacillus p... gi\|165976501, gi... - gi\|165976501\|ref\|YP_001652094.1\| thioredoxin [Actinobacillus pleuropneumoniae serovar 3 str. JL03], ... gi\|190150405, gi... - gi\|190150405\|ref\|YP_001968930.1\| thioredoxin [Actinobacillus pleuropneumoniae serovar 7 str. AP76], ...	131.0	[0..11]	[113..3]
gi\|25067747 - gi\|25067747\|gb\|AAN65341.1\| thioredoxin/transketolase fusion protein [synthetic construct]	131.0	[0..7]	[114..2]
gi\|25282752 - pir\|\|AD0471 thioredoxin 1 [imported] - Yersinia pestis (strain CO92) gi\|45437796, gi\|... - gi\|45442929\|ref\|NP_994468.1\| thioredoxin 1 [Yersinia pestis biovar Microtus str. 91001], gi\|45437796... gi\|21957044, gi\|... - gi\|22124275\|ref\|NP_667698.1\| thioredoxin 1 [Yersinia pestis KIM], gi\|21957044\|gb\|AAM83949.1\|AE013636... gi\|149289382, gi... - gi\|153997076\|ref\|ZP_02022209.1\| thioredoxin 1 [Yersinia pestis CA88-4125], gi\|149289382\|gb\|EDM39460.... gi\|15981783, gi\|... - gi\|218930871\|ref\|YP_002348746.1\| thioredoxin 1 [Yersinia pestis CO92], gi\|16124003\|ref\|NP_407316.1\| ... gi\|167055055, gi... - gi\|167425907\|ref\|ZP_02317660.1\| thioredoxin [Yersinia pestis biovar Mediaevalis str. K1973002], gi\|1... gi\|51587804, gi\|... - gi\|51594522\|ref\|YP_068713.1\| thioredoxin 1 [Yersinia pseudotuberculosis IP 32953], gi\|51587804\|emb\|C... gi\|167420843, gi... - gi\|167420843\|ref\|ZP_02312596.1\| thioredoxin [Yersinia pestis biovar Orientalis str. MG05-1020], gi\|1... gi\|186893520, gi... - gi\|186893520\|ref\|YP_001870632.1\| thioredoxin [Yersinia pseudotuberculosis PB1/+], gi\|186696546\|gb\|AC... gi\|169752779, gi... - gi\|170026245\|ref\|YP_001722750.1\| thioredoxin [Yersinia pseudotuberculosis YPIII], gi\|169752779\|gb\|AC... gi\|89103427, gi\|... - gi\|89103427\|ref\|ZP_01176005.1\| COG0526: Thiol-disulfide isomerase and thioredoxins [Yersinia pestis ... Q66G18\|Q66G18_YERPS - Thioredoxin 1 - Yersinia pseudotuberculosis gi\|108806148, gi... - gi\|108806148\|ref\|YP_650064.1\| thioredoxin 1 [Yersinia pestis Antiqua], gi\|108778061\|gb\|ABG12119.1\| t... gi\|229682448, gi... - gi\|229900429\|ref\|ZP_04515558.1\| thioredoxin 1 [Yersinia pestis Nepal516], gi\|229682448\|gb\|EEO78535.1... gi\|229837201, gi... - gi\|229837201\|ref\|ZP_04457366.1\| thioredoxin 1 [Yersinia pestis Pestoides A], gi\|229706144\|gb\|EEO9215... gi\|229695927, gi... - gi\|229839561\|ref\|ZP_04459720.1\| thioredoxin 1 [Yersinia pestis biovar Orientalis str. PEXU2], gi\|229... gi\|229686904, gi... - gi\|229900124\|ref\|ZP_04515261.1\| thioredoxin 1 [Yersinia pestis biovar Orientalis str. India 195], gi... gi\|166009693, gi... - gi\|166009693\|ref\|ZP_02230591.1\| thioredoxin [Yersinia pestis biovar Antiqua str. E1979001], gi\|16599... gi\|165921813, gi... - gi\|165926289\|ref\|ZP_02222121.1\| thioredoxin [Yersinia pestis biovar Orientalis str. F1991016], gi\|16... gi\|167402076, gi... - gi\|167402076\|ref\|ZP_02307555.1\| thioredoxin [Yersinia pestis biovar Antiqua str. UG05-0454], gi\|1670... gi\|166205236, gi... - gi\|166213563\|ref\|ZP_02239598.1\| thioredoxin [Yersinia pestis biovar Antiqua str. B42003004], gi\|1662... gi\|162354023, gi... - gi\|77634499\|ref\|ZP_00796598.1\| COG0526: Thiol-disulfide isomerase and thioredoxins [Yersinia pestis ... gi\|152961526, gi... - gi\|77630765\|ref\|ZP_00793351.1\| COG0526: Thiol-disulfide isomerase and thioredoxins [Yersinia pseudot...	131.0	[0..7]	[111..2]
gi\|83721362, gi\|... - gi\|83721362\|ref\|YP_442739.1\| thioredoxin [Burkholderia thailandensis E264], gi\|83655187\|gb\|ABC39250....	131.0	[0..7]	[110..40]

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Predicted Domain #1

Region A:
Residues: [1-115]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLKRCNFKNQ VKYFQSDFEQ LIRQHPEKII ILDFYATWCG PCKAIAPLYK ELATTHKGII  60
   61 FCKVDVDEAE DLCSKYDVKM MPTFIFTKNG DAIEALEGCV EDELRQKVLE HVSAQ

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	30.09691
Match:	2h73A
Description:	No description for 2h73A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits