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View Structure Prediction Details

Protein: lact-2
Organism: Caenorhabditis elegans
Length: 473 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for lact-2.

Description E-value Query
Range
Subject
Range
gi|39587804, gi|... - gi|39587804|emb|CAE67822.1| Hypothetical protein CBG13402 [Caenorhabditis briggsae], gi|187028685|em...
gi|157749559 - gi|157749559|ref|XP_001678493.1| Hypothetical protein CBG13402 [Caenorhabditis briggsae AF16]
315.0 [0..23] [473..7]

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Predicted Domain #1
Region A:
Residues: [1-473]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDAMEDKGET EAENVVKLET GSSRRLLIYG IASILAVSGA WLVVATTVDS LACFIEGEMH  60
   61 LDNLVGHVAP GYEKVEKVFR RNFADGWERE GASITVYHKD RVIVDLQGGY ADKASGRKWT 120
  121 PDTRTVVFST TKAVGAVCVA MLVDRGHISY DDKMSKIWPE FAQNGKENIT IDWLMSHRAG 180
  181 LAALDMPITI EDANDFEKMS EVIASQKPNW EPGTKSGYHA ITYGWIVDQI VRRSDPKGRS 240
  241 VGRFFKEEVA DVHGIDFHIG LPPSEEHTVS RLSMPSTLHL VREIVHDPRV LIVLAVFNLR 300
  301 PPNSIARKIA ANPTWFKLEQ DVNTFNNPTL HAMEQVAALG ITKSRDLARL FSLVQQGKLF 360
  361 STELLEKFRA PQVQGIDEVV MTPLPKGHGF LYERHPMGGK KWLVGHPGYG GSTVMMDLED 420
  421 GITIAYVSNG LKTGMGELTR TYRHLRDSVF ECLEKQKTGQ SVMIEEAVQA VAA

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 64.30103
Match: 1y54A
Description: Crystal structure of the native class C beta-lactamase from Enterobacter cloacae 908R complexed with BRL42715
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle