YRC Public Data Repository - Protein Structure Prediction

Protein:	gstk-1
Organism:	Caenorhabditis elegans
Length:	226 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gstk-1.

Description	E-value	Query Range	Subject Range
gi\|23500321, gi\|... - gi\|23500321\|ref\|NP_699761.1\| frnE protein, putative [Brucella suis 1330], gi\|23463934\|gb\|AAN33766.1\|... gi\|17989035, gi\|... - gi\|17989035\|ref\|NP_541668.1\| FRNE [Brucella melitensis 16M], gi\|17984876\|gb\|AAL53932.1\| frne [Brucel... gi\|225686363, gi... - gi\|225686363\|ref\|YP_002734335.1\| DSBA oxidoreductase [Brucella melitensis ATCC 23457], gi\|225642468\|... gi\|148557851, gi... - gi\|148557851\|ref\|YP_001257566.1\| dsba oxidoreductase [Brucella ovis ATCC 25840], gi\|148369136\|gb\|ABQ... gi\|254699814 - gi\|254699814\|ref\|ZP_05161642.1\| DSBA oxidoreductase [Brucella suis bv. 5 str. 513] gi\|25367097 - pir\|\|AI3595 frnE protein [imported] - Brucella melitensis (strain 16M) gi\|225615569, gi... - gi\|225629073\|ref\|ZP_03787106.1\| FRNE [Brucella ceti str. Cudo], gi\|225615569\|gb\|EEH12618.1\| FRNE [Br... gi\|161337450, gi... - gi\|161620639\|ref\|YP_001594525.1\| DSBA oxidoreductase [Brucella canis ATCC 23365], gi\|161337450\|gb\|AB... gi\|254711154 - gi\|254711154\|ref\|ZP_05172965.1\| DSBA oxidoreductase [Brucella pinnipedialis B2/94] gi\|254702952 - gi\|254702952\|ref\|ZP_05164780.1\| DSBA oxidoreductase [Brucella suis bv. 3 str. 686] gi\|254705930 - gi\|254705930\|ref\|ZP_05167758.1\| DSBA oxidoreductase [Brucella pinnipedialis M163/99/10]	200.0	[0..1]	[215..1]
gi\|83269547 - gi\|83269547\|ref\|YP_418838.1\| DSBA oxidoreductase [Brucella melitensis biovar Abortus 2308] gi\|254691063 - gi\|254691063\|ref\|ZP_05154317.1\| DSBA oxidoreductase [Brucella abortus bv. 6 str. 870] gi\|254695631 - gi\|254695631\|ref\|ZP_05157459.1\| DSBA oxidoreductase [Brucella abortus bv. 3 str. Tulya] gi\|82939821 - gi\|82939821\|emb\|CAJ12829.1\| DSBA oxidoreductase [Brucella melitensis biovar Abortus 2308] gi\|189022820, gi... - gi\|189022820\|ref\|YP_001932561.1\| DSBA oxidoreductase [Brucella abortus S19], gi\|189021394\|gb\|ACD7411... gi\|62317566, gi\|... - gi\|62317566\|ref\|YP_223419.1\| hypothetical protein BruAb2_0647 [Brucella abortus bv. 1 str. 9-941], g... gi\|237787926, gi... - gi\|237817113\|ref\|ZP_04596105.1\| Hypothetical protein, conserved [Brucella abortus str. 2308 A], gi\|2... gi\|254698848 - gi\|254698848\|ref\|ZP_05160676.1\| DSBA oxidoreductase [Brucella abortus bv. 2 str. 86/8/59] gi\|254732295 - gi\|254732295\|ref\|ZP_05190873.1\| DSBA oxidoreductase [Brucella abortus bv. 4 str. 292]	198.0	[0..1]	[215..1]
gi\|17740217, gi\|... - gi\|17935668\|ref\|NP_532458.1\| polyketide biosynthesis associated protein [Agrobacterium tumefaciens s... gi\|25367092, gi\|... - pir\|\|AH2794 polyketide biosynthesis associated protein Atu1775 [imported] - Agrobacterium tumefacien...	192.0	[0..3]	[223..22]
gi\|56556571, gi\|... - gi\|58332184\|ref\|NP_001011244.1\| glutathione S-transferase kappa 1 [Xenopus (Silurana) tropicalis], g...	192.0	[0..1]	[223..1]
gi\|148235618, gi... - gi\|77748129\|gb\|AAI06345.1\| MGC130886 protein [Xenopus laevis], gi\|148235618\|ref\|NP_001089691.1\| hypo...	191.0	[0..1]	[220..1]
gi\|49328316, gi\|... - gi\|49476760\|ref\|YP_034599.1\| protein disulfide isomerase (S-S rearrangase) [Bacillus thuringiensis s...	191.0	[0..5]	[226..1]
gi\|115256788, gi... - gi\|116252140\|ref\|YP_767978.1\| Dsb family thioredoxin protein [Rhizobium leguminosarum bv. viciae 384...	190.0	[0..3]	[210..2]
gi\|229130859, gi... - gi\|229130859\|ref\|ZP_04259799.1\| hypothetical protein bcere0015_52830 [Bacillus cereus BDRD-Cer4], gi... gi\|30018521, gi\|... - gi\|30018521\|ref\|NP_830152.1\| FrnE protein [Bacillus cereus ATCC 14579], gi\|29894061\|gb\|AAP07353.1\| F...	189.0	[0..5]	[221..1]
gi\|52144967, gi\|... - gi\|52144967\|ref\|YP_081862.1\| protein disulfide isomerase (S-S rearrangase) [Bacillus cereus E33L], g...	187.0	[0..5]	[226..1]
gi\|56418737, gi\|... - gi\|56418737\|ref\|YP_146055.1\| protein-disulfide isomerase [Geobacillus kaustophilus HTA426], gi\|56378...	187.0	[0..5]	[216..1]

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Predicted Domain #1

Region A:
Residues: [1-226]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPKLPRIDFY FDVISPYSYI AFEVFQKLET QWKGVTIRYI PFFLGAVMKE SGNRPPAMLP  60
   61 ARSIMMMTDL KRTAKFWDIP LTPPPLFMEW IKKYRTTGAM KVLLVLQEQD KELMLRAARE 120
  121 MWVRLWSRSE KIFEDQDFVE VLKAVGVKNP EQIVEKSKDE KYIKILMENT NKGVDLMAYG 180
  181 APWINVHTED GSEHSFFGSD RFHLIADLLQ QPQPLPDRLF GQKSKL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	46.39794
Match:	1yzxA
Description:	Crystal structure of human kappa class glutathione transferase
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits