YRC Public Data Repository - Protein Structure Prediction

Protein:	CE01690
Organism:	Caenorhabditis elegans
Length:	279 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE01690.

Description	E-value	Query Range	Subject Range
gi\|157748759 - gi\|157748759\|ref\|XP_001678093.1\| Hypothetical protein CBG01062 [Caenorhabditis briggsae AF16] gi\|39589266, gi\|... - gi\|39589266\|emb\|CAE57999.1\| Hypothetical protein CBG01062 [Caenorhabditis briggsae], gi\|187038558\|em...	291.0	[0..1]	[279..1]
ARCA_BACCN - Arginine deiminase OS=Bacillus cytotoxicus (strain DSM 22905 / CIP 110041 / 391-98 / NVH 391-98) GN=...	273.0	[0..10]	[279..98]
ARCA_BACHK - Arginine deiminase OS=Bacillus thuringiensis subsp. konkukian GN=arcA PE=3 SV=1 gi\|195992622, gi... - gi\|196034579\|ref\|ZP_03101987.1\| arginine deiminase [Bacillus cereus W], gi\|195992622\|gb\|EDX56582.1\| ... ARCA_BACC0 - Arginine deiminase OS=Bacillus cereus (strain AH820) GN=arcA PE=3 SV=1 gi\|228913109, gi... - gi\|228913109\|ref\|ZP_04076748.1\| Arginine deiminase [Bacillus thuringiensis serovar pulsiensis BGSC 4... ARCA_BACHK - Arginine deiminase OS=Bacillus thuringiensis subsp. konkukian (strain 97-27) GN=arcA PE=3 SV=1 gi\|228944169, gi... - gi\|228944169\|ref\|ZP_04106548.1\| Arginine deiminase [Bacillus thuringiensis serovar monterrey BGSC 4A... gi\|229120021, gi... - gi\|229120021\|ref\|ZP_04249276.1\| Arginine deiminase [Bacillus cereus 95/8201], gi\|228663487\|gb\|EEL190... gi\|228925616, gi... - gi\|228925616\|ref\|ZP_04088705.1\| Arginine deiminase [Bacillus thuringiensis serovar pondicheriensis B... gi\|228827843, gi... - gi\|228931863\|ref\|ZP_04094759.1\| Arginine deiminase [Bacillus thuringiensis serovar andalousiensis BG...	270.0	[0..10]	[279..98]
ARCA_BACC1 - Arginine deiminase OS=Bacillus cereus (strain ATCC 10987 / NRS 248) GN=arcA PE=3 SV=1	270.0	[0..10]	[279..98]
gi\|206737456, gi... - gi\|206968536\|ref\|ZP_03229492.1\| arginine deiminase [Bacillus cereus AH1134], gi\|206737456\|gb\|EDZ5460... ARCA_BACC4 - Arginine deiminase OS=Bacillus cereus (strain B4264) GN=arcA PE=3 SV=1 ARCA_BACC2 - Arginine deiminase OS=Bacillus cereus (strain G9842) GN=arcA PE=3 SV=1 gi\|228899081, gi... - gi\|228899081\|ref\|ZP_04063353.1\| Arginine deiminase [Bacillus thuringiensis IBL 4222], gi\|228860522\|g... gi\|228937650, gi... - gi\|228937650\|ref\|ZP_04100287.1\| Arginine deiminase [Bacillus thuringiensis serovar berliner ATCC 107... gi\|228950915, gi... - gi\|228950915\|ref\|ZP_04113037.1\| Arginine deiminase [Bacillus thuringiensis serovar kurstaki str. T03... gi\|228802862, gi... - gi\|228956821\|ref\|ZP_04118606.1\| Arginine deiminase [Bacillus thuringiensis serovar pakistani str. T1... gi\|228789126, gi... - gi\|228970539\|ref\|ZP_04131189.1\| Arginine deiminase [Bacillus thuringiensis serovar thuringiensis str... gi\|228782557, gi... - gi\|228977109\|ref\|ZP_04137510.1\| Arginine deiminase [Bacillus thuringiensis Bt407], gi\|228782557\|gb\|E... gi\|228727051, gi... - gi\|229042260\|ref\|ZP_04190012.1\| Arginine deiminase [Bacillus cereus AH676], gi\|228727051\|gb\|EEL78256... gi\|228714926, gi... - gi\|229068112\|ref\|ZP_04201419.1\| Arginine deiminase [Bacillus cereus F65185], gi\|228714926\|gb\|EEL6679... gi\|228675429, gi... - gi\|229108029\|ref\|ZP_04237655.1\| Arginine deiminase [Bacillus cereus Rock1-15], gi\|228675429\|gb\|EEL30... gi\|228657514, gi... - gi\|229125856\|ref\|ZP_04254881.1\| Arginine deiminase [Bacillus cereus BDRD-Cer4], gi\|228657514\|gb\|EEL1... gi\|229143149, gi... - gi\|229143149\|ref\|ZP_04271581.1\| Arginine deiminase [Bacillus cereus BDRD-ST24], gi\|228640230\|gb\|EEK9... gi\|228606424, gi... - gi\|229176949\|ref\|ZP_04304344.1\| Arginine deiminase [Bacillus cereus 172560W], gi\|228606424\|gb\|EEK638... gi\|228594817, gi... - gi\|229188628\|ref\|ZP_04315667.1\| Arginine deiminase [Bacillus cereus ATCC 10876], gi\|228594817\|gb\|EEK... gi\|75759587, gi\|... - gi\|75759587\|ref\|ZP_00739674.1\| Arginine deiminase [Bacillus thuringiensis serovar israelensis ATCC 3... ARCA_BACCR - Arginine deiminase OS=Bacillus cereus (strain ATCC 14579 / DSM 31 / JCM 2152 / NBRC 15305 / NCIMB 93...	270.0	[0..10]	[279..98]
gi\|77407700, gi\|... - gi\|77407700\|ref\|ZP_00784455.1\| arginine deiminase [Streptococcus agalactiae COH1], gi\|77173699\|gb\|EA...	261.0	[0..3]	[277..93]
ARCA_STRA1 - Arginine deiminase OS=Streptococcus agalactiae serotype Ia (strain ATCC 27591 / A909 / CDC SS700) GN... gi\|77405636, gi\|... - gi\|77405636\|ref\|ZP_00782725.1\| arginine deiminase [Streptococcus agalactiae H36B], gi\|77175780\|gb\|EA... ARCA_STRA1 - Arginine deiminase OS=Streptococcus agalactiae serotype Ia GN=arcA PE=3 SV=1	261.0	[0..3]	[277..93]
ARCA_STRPG - Arginine deiminase OS=Streptococcus pyogenes serotype M5 (strain Manfredo) GN=arcA PE=1 SV=3 ARCA_STRPD - Arginine deiminase OS=Streptococcus pyogenes serotype M2 (strain MGAS10270) GN=arcA PE=3 SV=1	260.0	[0..4]	[277..94]
gi\|254851791 - gi\|254851791\|ref\|ZP_05241139.1\| arginine deiminase [Listeria monocytogenes FSL R2-503] gi\|254824728 - gi\|254824728\|ref\|ZP_05229729.1\| arginine deiminase [Listeria monocytogenes FSL J1-194] gi\|255519956 - gi\|255519956\|ref\|ZP_05387193.1\| arginine deiminase [Listeria monocytogenes FSL J1-175] gi\|254879865 - gi\|254879865\|ref\|ZP_05252575.1\| arginine deiminase [Listeria monocytogenes FSL J2-071] gi\|47019370, gi\|... - gi\|47092168\|ref\|ZP_00229960.1\| arginine deiminase [Listeria monocytogenes str. 4b H7858], gi\|4701937... gi\|133728568, gi... - gi\|153164868\|ref\|ZP_01926043.1\| arginine deiminase [Listeria monocytogenes FSL N1-017], gi\|133728568... gi\|133736709, gi... - gi\|254930818\|ref\|ZP_05264177.1\| arginine deiminase [Listeria monocytogenes HPB2262], gi\|153200431\|re...	260.0	[0..1]	[279..90]
ARCA_LISMF - Arginine deiminase OS=Listeria monocytogenes serotype 4b (strain F2365) GN=arcA PE=3 SV=1 ARCA_LISMC - Arginine deiminase OS=Listeria monocytogenes serotype 4b (strain CLIP80459) GN=arcA PE=3 SV=1 ARCA_LISMC - Arginine deiminase OS=Listeria monocytogenes serotype 4b (strain Clip81459) GN=arcA PE=3 SV=1	260.0	[0..1]	[279..92]

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Predicted Domain #1

Region A:
Residues: [1-279]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSDSETMSAA KSAAHILKRV LMVPPKHFTV EYTINPWMGG VVDKQKAHQQ WNSLKSAIEN  60
   61 AGVPVLTMEQ TEGLPDQVFV CNSGLVYDDQ VYLSRFRHKE RSGEQPLYLE WFKKNNIKTI 120
  121 GEGYEEIFEG GGDAVFSDRK TLWAGYGERS SKSVYEKIKA LGTFDIVLCD MILPNFYHLD 180
  181 TCFAPVDETS ALYYPPAFSE ATNKEILRRL PNSIAVSEAE ANAFVCNAIT IRDTVISPIG 240
  241 VSQATKDYLS ARGKRVEEVD MSEFMKSGGA CQCLVLRLL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	66.045757
Match:	1rxxA
Description:	Structure of arginine deiminase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	0.123492416969748	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: