YRC Public Data Repository - Protein Structure Prediction

Protein:	sdhb-1
Organism:	Caenorhabditis elegans
Length:	298 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for sdhb-1.

Description	E-value	Query Range	Subject Range
gi\|47222756 - gi\|47222756\|emb\|CAG01723.1\| unnamed protein product [Tetraodon nigroviridis]	277.0	[0..17]	[293..7]
gi\|114554304, gi... - gi\|114554304\|ref\|XP_001155457.1\| PREDICTED: succinate dehydrogenase complex, subunit B, iron sulfur ... SDHB - succinate dehydrogenase complex, subunit B, iron sulfur (Ip)	275.0	[0..17]	[293..3]
gi\|665925, gi\|92... - gi\|9257242\|ref\|NP_002991.1\| succinate dehydrogenase complex, subunit B, iron sulfur (Ip) [Homo sapie...	273.0	[0..17]	[293..3]
gi\|108998301 - gi\|108998301\|ref\|XP_001088349.1\| PREDICTED: succinate dehydrogenase complex, subunit B, iron sulfur ... gi\|90086177 - gi\|90086177\|dbj\|BAE91641.1\| unnamed protein product [Macaca fascicularis]	272.0	[0..17]	[293..3]
SDHB_RAT - Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial OS=Rattus norvegicus GN=Sdhb...	272.0	[0..6]	[292..2]
gi\|39589111, gi\|... - gi\|39589111\|emb\|CAE57843.1\| Hypothetical protein CBG00872 [Caenorhabditis briggsae], gi\|187038713\|em... gi\|157749069 - gi\|157749069\|ref\|XP_001678248.1\| Hypothetical protein CBG00872 [Caenorhabditis briggsae AF16]	272.0	[0..1]	[298..1]
gi\|25284631 - pir\|\|D87686 succinate dehydrogenase, iron-sulfur protein [imported] - Caulobacter crescentus gi\|16127756, gi\|... - gi\|16127756\|ref\|NP_422320.1\| succinate dehydrogenase iron-sulfur subunit [Caulobacter crescentus CB1... gi\|220965750, gi... - gi\|221236577\|ref\|YP_002519014.1\| succinate dehydrogenase iron-sulfur protein [Caulobacter crescentus...	271.0	[0..31]	[287..1]
gi\|57044796 - gi\|57044796\|ref\|XP_535392.1\| PREDICTED: similar to Succinate dehydrogenase [ubiquinone] iron-sulfur ...	270.0	[0..6]	[293..2]
SDHB_CHICK - Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial OS=Gallus gallus GN=SDHB PE=...	268.0	[0..5]	[293..2]

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Predicted Domain #1

Region A:
Residues: [1-298]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLARSARLLH SAELAANAIR AASGAPATAA AAEASFPSTD DVAAKTKKTG NRIKTFEIYR  60
   61 FNPEAPGAKP TVQKFDVDLD QCGTMILDAL IKIKNEVDPT LTFRRSCREG ICGSCAMNIG 120
  121 GQNTLACICK IDSDTSKSTK IYPLPHMFVV KDLVPDMNLF YAQYASIQPW IQKKTPLTLG 180
  181 EKQMHQSVAE RDRLDGLYEC ILCACCSTSC PSYWWNADKY LGPAVLMQAY RWVIDSRDDY 240
  241 ATERLHRMHD SFSAFKCHTI MNCTKTCPKH LNPAKAIGEI KSLLTGFTSK PAAEPSAF

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	71.69897
Match:	1zoyB
Description:	Crystal Structure of Mitochondrial Respiratory Complex II from porcine heart at 2.4 Angstroms
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits