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View Structure Prediction Details

Protein: CE01487
Organism: Caenorhabditis elegans
Length: 395 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE01487.

Description E-value Query
Range
Subject
Range
gi|70878103 - gi|70878103|gb|EAN91386.1| trans-sialidase, putative [Trypanosoma cruzi]
gi|71648919 - gi|71648919|ref|XP_813237.1| trans-sialidase [Trypanosoma cruzi strain CL Brener]
181.0 [0..1] [348..690]

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Predicted Domain #1
Region A:
Residues: [1-249]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLLPQPKSTA KKPKGEAKSL VARERKSQPQ DSALMEVPAK REMPKKEVKK IRSVHKVESV  60
   61 TKTKSAKLRR KKSYSLSSDN ESKYKKSISP AASEEASIEK KKEEMTSKLP EKSVAMKTAN 120
  121 SPKTFNMELA KKFFEMRMKE SQRTSRMATK SDSSLETMPE SSHNSGQSSK SRKSQRTRGK 180
  181 STPLDRNIFK ENGEPVWVVP DRKPGELVMN EHGEMVKYPE LMAALEEDGL EMEDGKGWFQ 240
  241 KMSSYLMGE

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [250-395]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LDQGRIDNKA ASKDINPFAS METLEERTDL YFSRETVIYN TTDSIFNLCH NAIERFSQQN  60
   61 NEDTIRKSVP PSREPGSKMM TVSKDEEEKT AIVTSIRFDA RAYRISYDRR RPVHSIQKFR 120
  121 KKYQKQLKKS QEEKKDDTKT AKNEGD

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle