YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: rfc-4
Organism: Caenorhabditis elegans
Length: 334 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for rfc-4.

Description E-value Query
Range
Subject
Range
gi|83850349, gi|... - gi|83856549|ref|ZP_00950078.1| putative ATPase, AAA family protein [Croceibacter atlanticus HTCC2559...
233.0 [0..13] [334..1]

Back

Predicted Domain #1
Region A:
Residues: [1-334]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEEPMEVDNK RPKVLTWTEK YRPKTLDDIA YQDEVVTMLK GALQGRDLPH LLFYGPPGTG  60
   61 KTSAALAFCR QLFPKNIFHD RVLDLNASDE RGIAVVRQKI QSFSKSSLGH SHREDVLKLK 120
  121 IIILDEVDAM TREAQAAMRR VIEDFSKTTR FILICNYVSR LIPPVVSRCA KFRFKSLPAE 180
  181 IQVQRLRTIC DAEGTPMSDD ELKQVMEYSE GDLRRAVCTL QSLAPILKSG DDNARNCYLR 240
  241 GSSDSLLISN VCKSILTADV PQIIALTKDI TKSCTGVAFI RRCFQQLMDE DVINDENIGV 300
  301 MGKLVATCEK RILDGCDLEN NLLDFLLTLR ETIQ

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 57.221849
Match: 2chqA
Description: No description for 2chqA was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle