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View Structure Prediction Details

Protein: ced-4
Organism: Caenorhabditis elegans
Length: 549 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ced-4.

Description E-value Query
Range
Subject
Range
gi|44921725 - gi|44921725|gb|AAS49213.1| disease resistance protein [Glycine max]
296.0 [0..6] [528..68]

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Predicted Domain #1
Region A:
Residues: [1-549]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLCEIECRAL STAHTRLIHD FEPRDALTYL EGKNIFTEDH SELISKMSTR LERIANFLRI  60
   61 YRRQASELGP LIDFFNYNNQ SHLADFLEDY IDFAINEPDL LRPVVIAPQF SRQMLDRKLL 120
  121 LGNVPKQMTC YIREYHVDRV IKKLDEMCDL DSFFLFLHGR AGSGKSVIAS QALSKSDQLI 180
  181 GINYDSIVWL KDSGTAPKST FDLFTDILLM LKSEDDLLNF PSVEHVTSVV LKRMICNALI 240
  241 DRPNTLFVFD DVVQEETIRW AQELRLRCLV TTRDVEISNA ASQTCEFIEV TSLEIDECYD 300
  301 FLEAYGMPMP VGEKEEDVLN KTIELSSGNP ATLMMFFKSC EPKTFEKMAQ LNNKLESRGL 360
  361 VGVECITPYS YKSLAMALQR CVEVLSDEDR SALAFAVVMP PGVDIPVKLW SCVIPVDICS 420
  421 NEEEQLDDEV ADRLKRLSKR GALLSGKRMP VLTFKIDHII HMFLKHVVDA QTIANGISIL 480
  481 EQRLLEIGNN NVSVPERHIP SHFQKFRRSS ASEMYPKTTE ETVIRPEDFP KFMQLHQKFY 540
  541 DSLKNFACC

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 55.0
Match: 2a5yB
Description: Structure of a CED-4/CED-9 complex
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle