| Protein: | set-2 |
| Organism: | Caenorhabditis elegans |
| Length: | 739 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for set-2.
| Description | E-value | Query Range |
Subject Range |
|
|
308.0 | [0..61] | [739..1124] |
|
Region A: Residues: [1-99] |
1 11 21 31 41 51
| | | | | |
1 MYNNSAPYLN HSSLNTVRKK VVTVRRVLPS LPPPPPPPPS LYPPCSVFKV PYIPQRVYRS 60
61 INSTLYNNQS FASSSRGFYR KQKPIPKSHP KHQEHHHHA
|
| Detection Method: |  |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [100-274] |
1 11 21 31 41 51
| | | | | |
1 KASVSTPVHS SSTSRNSSVA PTPQRTVSTS SSSSSAATSA RVSEDESDSD STPGEVQRRK 60
61 TSVLSNDKRR RRASFSSTSI QSSPERQRDV SSSSRTSSSS STSSMKQEET ADEKSRKRKL 120
121 IMSSDESSTT GSTATSVVSS RQSSLEPQQE KTDGEPPKKK SQTDFISERV SKIEG
|
| Detection Method: | |
| Confidence: | 1.02 |
| Match: | 1yx4A |
| Description: | Structure of S5a bound to monoubiquitin provides a model for polyubiquitin recognition |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [275-466] |
1 11 21 31 41 51
| | | | | |
1 EERPLPEPVE TSGPIIGDSS YLPYKIVHWE KAGIIEMNLP ANSIRAHEYH PFTTEHCYFG 60
61 IDDPRQPKIQ IFDHSPCKSE PGSEPLKITP APWGPIDNVA ETGPLIYMDV VTAPKTVQKK 120
121 QKPRKQVFEK DPYEYYEPPP TKRPAPPPRF KKTFKPRSEE EKKKIIGDCE DLPDLEDQWY 180
181 LRAALNEMQS EV
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [467-739] |
1 11 21 31 41 51
| | | | | |
1 KSADELPWKK MLTFKEMLRS EDPLLRLNPI RSKKGLPDAF YEDEELDGVI PVAAGCSRAR 60
61 PYEKMTMKQK RSLVRRPDNE SHPTAIFSER DETAIRHQHL ASKDMRLLQR RLLTSLGDAN 120
121 NDFFKINQLK FRKKMIKFAR SRIHGWGLYA MESIAPDEMI VEYIGQTIRS LVAEEREKAY 180
181 ERRGIGSSYL FRIDLHHVID ATKRGNFARF INHSCQPNCY AKVLTIEGEK RIVIYSRTII 240
241 KKGEEITYDY KFPIEDDKID CLCGAKTCRG YLN
|
| Detection Method: | |
| Confidence: | 56.522879 |
| Match: | 2r3aA |
| Description: | No description for 2r3aA was found. |
