YRC Public Data Repository - Protein Structure Prediction

Protein:	tag-170
Organism:	Caenorhabditis elegans
Length:	208 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for tag-170.

Description	E-value	Query Range	Subject Range
gi\|157758853 - gi\|157758853\|ref\|XP_001671770.1\| Hypothetical protein CBG19670 [Caenorhabditis briggsae AF16] gi\|39581010, gi\|... - gi\|39581010\|emb\|CAE72491.1\| Hypothetical protein CBG19670 [Caenorhabditis briggsae], gi\|187023981\|em...	152.0	[0..1]	[208..1]
gi\|38051964 - gi\|38051964\|gb\|AAH60541.1\| Txndc9 protein [Rattus norvegicus]	145.0	[0..6]	[189..44]
gi\|21594045 - gi\|21594045\|gb\|AAM65963.1\| putative ATP binding protein [Arabidopsis thaliana]	141.0	[0..1]	[205..1]
AGAP003485-PA - Thioredoxin domain-containing protein 9\|protein_coding\|2R:38587176:38587905:-1\|gene:AGAP003485 gi\|55244531, gi\|... - gi\|58377512\|ref\|XP_309682.2\| AGAP003485-PA [Anopheles gambiae str. PEST], gi\|55244531\|gb\|EAA05402.2\|...	139.0	[0..5]	[189..1]
gi\|53127834 - gi\|53127834\|emb\|CAG31246.1\| hypothetical protein [Gallus gallus]	138.0	[0..3]	[199..8]
gi\|73970067 - gi\|73970067\|ref\|XP_531785.2\| PREDICTED: similar to ATP binding protein associated with cell differen... gi\|149727132 - gi\|149727132\|ref\|XP_001490320.1\| PREDICTED: similar to ATP binding protein associated with cell diff...	138.0	[0..6]	[189..11]
gi\|2342477 - gi\|2342477\|dbj\|BAA21881.1\| ATP binding protein [Homo sapiens]	138.0	[0..6]	[189..11]

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Predicted Domain #1

Region A:
Residues: [1-208]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAANIQQQFG EQLLRAAQVV EEQIDQEMNK LENLEEDDLE VIRRQRMEQM KKAQKDRIEM  60
   61 LSHGHGKYEE VADEKEFFEA TKKSDKVVCL FYLPGNFRCK IVDKHFEILA RKHVGTRFIH 120
  121 VNAEKVHFLT TRLNIRVIPS IAIVVKQQTV DYIRGFDELG GKDEFTTETM ENRLARSEVL 180
  181 TVEKKHTAPA KKKIIRSGVE EYDNEEDW

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	23.30103
Match:	1b9xC
Description:	Phosducin
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
antioxidant activity	0.0763067705972125	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: