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View Structure Prediction Details

Protein: wdfy-2
Organism: Caenorhabditis elegans
Length: 415 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for wdfy-2.

Description E-value Query
Range
Subject
Range
gi|186464325, gi... - gi|23128981|ref|ZP_00110817.1| COG2319: FOG: WD40 repeat [Nostoc punctiforme PCC 73102], gi|18668187...
514.0 [0..3] [414..1186]

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Predicted Domain #1
Region A:
Residues: [1-360]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAAIINQRVE QGESSMGGAK PALLHRITGH VARINDVILL SKDEGVWTAS DDRSVRLYLK  60
   61 RDNDQFWPSI HHFMPVAPTS LYYSEETYKL LVGLINGNVY EFSVADDFNS MTESRKWTCH 120
  121 AGPISGLGFA LSSELIFSCS RDKSIVWHCS ENSNKMGSYL LENSCTAMVI DLPFVFVGDH 180
  181 GGHVTVLRIV DNQPNLVSKL SAHTNAITSL TWDGNKKVLY SGSSDHLIIM WDIGGGRGEA 240
  241 YELNGHNGKV TTLCAAPAAK RLFSADEHGK LMCWDMNCKR VETPEWKTSD CCQKCNQPFF 300
  301 WNLQAMWQRK VVGLRQHHCR TCGSAVCGSC CDNWTTYPPM GYETKIRICN DCNARMKDNP 360
  361 

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 51.0
Match: 1nexB
Description: Cdc4 F-box and linker domains; Cdc4 propeller domain
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [361-415]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QNFNLTPLAI PHEIHTGITA MHLQETLGLL VTSGQNRVIM IWDVRSVCSA PSGSQ

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 71.09691
Match: 2ovpB
Description: No description for 2ovpB was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle