YRC Public Data Repository - Protein Structure Prediction

Protein:	CE00629
Organism:	Caenorhabditis elegans
Length:	129 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE00629.

Description	E-value	Query Range	Subject Range
gi\|119617230 - gi\|119617230\|gb\|EAW96824.1\| biogenesis of lysosome-related organelles complex-1, subunit 1 [Homo sap... BL1S1_PONAB - Biogenesis of lysosome-related organelles complex 1 subunit 1 OS=Pongo abelii GN=BLOC1S1 PE=2 SV=2 gi\|55638225 - gi\|55638225\|ref\|XP_509120.1\| PREDICTED: similar to GCN5-like 1; GCN5L1 [Pan troglodytes]	178.0	[0..1]	[121..33]
gi\|157774079 - gi\|157774079\|ref\|XP_001665105.1\| hypothetical protein CBG09808 [Caenorhabditis briggsae AF16] gi\|187031298, gi... - gi\|39590604\|emb\|CAE64974.1\| Hypothetical protein CBG09808 [Caenorhabditis briggsae], gi\|187031298\|em...	167.0	[0..1]	[129..7]
ENSPTRT00000009310 - null BL1S1_BOVIN - Biogenesis of lysosome-related organelles complex 1 subunit 1 OS=Bos taurus GN=BLOC1S1 PE=2 SV=1 BL1S1_PONPY - Biogenesis of lysosome-related organelles complex-1 subunit 1 - Pongo pygmaeus (Orangutan) BL1S1_PONAB - Biogenesis of lysosome-related organelles complex 1 subunit 1 OS=Pongo abelii GN=BLOC1S1 PE=2 SV=1 BLOC1S1 - biogenesis of lysosomal organelles complex-1, subunit 1 BL1S1_RAT - Biogenesis of lysosome-related organelles complex 1 subunit 1 OS=Rattus norvegicus GN=Bloc1s1 PE=3 S... CCDS8889.1_1 - null gi\|149756543 - gi\|149756543\|ref\|XP_001504825.1\| PREDICTED: similar to Biogenesis of lysosome-related organelles com...	166.0	[0..1]	[121..5]
BL1S1_MOUSE - Biogenesis of lysosome-related organelles complex 1 subunit 1 OS=Mus musculus GN=Bloc1s1 PE=1 SV=2	165.0	[0..1]	[121..5]
gi\|109097086 - gi\|109097086\|ref\|XP_001095809.1\| PREDICTED: similar to Biogenesis of lysosome-related organelles com...	156.0	[0..17]	[121..7]
gi\|51950091, gi\|... - gi\|51950091\|gb\|AAH82449.1\| MGC84073 protein [Xenopus laevis], gi\|148235775\|ref\|NP_001087901.1\| MGC84...	155.0	[0..1]	[121..5]
BL1S1_XENTR - Biogenesis of lysosome-related organelles complex 1 subunit 1 OS=Xenopus tropicalis GN=bloc1s1 PE=2 ...	153.0	[0..1]	[121..5]

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Predicted Domain #1

Region A:
Residues: [1-129]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLKEHSKKQH LRREVQEKLK NEAIVAAQTL STAVVDHLNA KVAQAYGNQK RLDVEAKRFE  60
   61 NNSAALAKQT EQWLFITEGL NYALKEIGDV ENWSKTIEND MKIITETLRR AYEAKNPPLP 120
  121 PNQANPASH

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	102.045757
Match:	PF06320.4
Description:	No description for PF06320.4 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.951	N/A	N/A	f.17.1	F1F0 ATP synthase subunit C

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits