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View Structure Prediction Details

Protein: cdc-25.3
Organism: Caenorhabditis elegans
Length: 316 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for cdc-25.3.

Description E-value Query
Range
Subject
Range
gi|30584239, gi|... - gi|60653191|gb|AAX29290.1| cell division cycle 25B [synthetic construct], gi|30584239|gb|AAP36368.1|...
199.0 [0..5] [293..285]

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Predicted Domain #1
Region A:
Residues: [1-72]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MCVDVPCENC IVRNDGLRLK CSECAEGSSK LFPRQNRQHS SAISHISNSS PPTRKRSIDG  60
   61 GYTSGTDSAN TS

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [73-316]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EIVIKKRLTF SKKSHSTSEI ETWNAHLQVD YHLETVTPSC STVYQKITSE TLIEIMQKLS  60
   61 QIEFMQKYIL IDCRYDYEYN GGHIKGAQSL FNPETAADFF FNKDGSKKIN RIPIFYCEYS 120
  121 QKRGPTMANN LREVDRKLNS NIYPRCDYEE IYLLEGGYKN FYAFTRGLEK EQRVQLCEPD 180
  181 NYVIMFDDRY KAELRKHQFH KKNVSKPMKK WSSTTSVISI LTTSGTRIST LRQTCDPIHE 240
  241 HDAH

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 38.69897
Match: 1cwrA
Description: CDC25b
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle