YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: eif-3.D
Organism: Caenorhabditis elegans
Length: 570 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for eif-3.D.

Description E-value Query
Range
Subject
Range
gi|91088805 - gi|91088805|ref|XP_969059.1| PREDICTED: similar to AGAP002337-PA [Tribolium castaneum]
825.0 [0..3] [569..10]

Back

Predicted Domain #1
Region A:
Residues: [1-104]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MALPKFELLS LADNTVGWGP LASSSSADEP VPFQQFNKAD RIGRVADWIG VDRFYRRGNE  60
   61 RYNERVYGSA ANAGSQFDYI HGMDEHNFQL VDTSKPMARN PQRN

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [105-168]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 FRVRQMHLRK MMQKENEKRE MVNQSTNLRM KRSIAKEQQR AFKMWQRRGG NARQGQRGQG  60
   61 GRFG

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [169-306]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GDRPKERLPS VQVRPEWVVL EEMNLSAFSK LALPNIPGGD DIGDHQYGSL QYYDKTIDRV  60
   61 SVKNSIPLQR CAGVFYNVTT TEDPVIQELA QGGAGNVFGT DIILATLMTA PRSVYSWDIV 120
  121 AYRVGDKLFF DKRNTRDI

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [307-482]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LNPVETLTVS ETSAEPPSFD GNGINNAKDL ATEAFYINQN FRRQVVKRND AGFTFKNARA  60
   61 PFEDEETGES GTAYKYRKWN LGNGVDGKPV ELVCRTELDG VIHGLGNETQ TLTIKAFNEW 120
  121 DSTQSGGVDW RTKLDVQKGA VMATEIKNNS AKVAKWTLQA LLAGSDTMKL GYVSRN

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #5
Region A:
Residues: [483-570]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NARSTQNHSI LLTQYVKPTE FASNIALNMD NCWGILRCVI DSCMKQKPGK YLLMKDPQSP  60
   61 VIRLYSLPEG TFESERESSD EENSDDDQ

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle