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View Structure Prediction Details

Protein: CE00235
Organism: Caenorhabditis elegans
Length: 435 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE00235.

Description E-value Query
Range
Subject
Range
CE33287 - F-box domain. status:Partially_confirmed UniProt:P34484 protein_id:CAA77586.2
272.0 [0..7] [431..2]

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Predicted Domain #1
Region A:
Residues: [1-160]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEFMSSPFPI TKLPLVPRCK ILKFFDYGDL LDISLCSKRM AQTVRDIHIT ADLHYLTLGK  60
   61 DNQQSIQIQF KQEQKVIYWD FKLDLVEEEM PERRTVGAIV FEKCRKYSQR EIGLFQFSSY 120
  121 HYDIEDSIGE VSKHLFYIFP TSIEIRLSVQ FCRTLRNLFS 

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [161-349]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 YEHLQNIDVL TLLGSIMLQN VLEKIFSRVK IRRKLWVEPE TDDEYPILQA LHVENLHLAS  60
   61 ARWMTRDHLL QLTCCSVDFH EHYFGWKDLT VFAENWLNNK NSKLEMVRFG WPNDIDSLSA 120
  121 NFEGLKTHKW DPKQREKKFL YSKDNRLHRI DCTKGLELER DDGELATWIY EPDPLTSSLY 180
  181 FLVWTERFP

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [350-435]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EKKRLEKLPK MLAPYYEQLV QLRKEYDDSC NLEWLLSNPN LKLDEFVETY RILRGMDSEV  60
   61 RLSSIGRVRR RRIFDEMYNI IDAQND

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


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Created and Maintained by: Michael Riffle