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View Structure Prediction Details

Protein: CE00190
Organism: Caenorhabditis elegans
Length: 359 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE00190.

Description E-value Query
Range
Subject
Range
gi|187031538, gi... - gi|39590844|emb|CAE65217.1| Hypothetical protein CBG10092 [Caenorhabditis briggsae], gi|187031538|em...
gi|157774559 - gi|157774559|ref|XP_001665345.1| hypothetical protein CBG10092 [Caenorhabditis briggsae AF16]
205.0 [0..1] [359..1]

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Predicted Domain #1
Region A:
Residues: [1-198]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVRVCRVVPK DWSKFQPVGN VIPRTRFIVF KTPINSQLST KIHKEQRFTT NDLFRQLSER  60
   61 GQYLGLVVDL SDTDRYYDKK DITGMCVQYE KVNCPGRGFI ERDDCVESFH QVIQDYTDKC 120
  121 DDPDALIGVH CTNGINRCGY LICRFLIDRL GWSSHEAIDA FEQARGYSIE KGAYVMALHK 180
  181 AAKDKRDKQV DSDSDSSE

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 32.0
Match: 2c46A
Description: CRYSTAL STRUCTURE OF THE HUMAN RNA guanylyltransferase and 5'- phosphatase
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [199-359]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RQRKKKNKRK HREIVEHENI VLINTIIGEL GSQAASVSGT DYQNSPNGVS VDPGQPQPHH  60
   61 WGFAIKRSKY AQLNQPVANG ANTPPEPSEG TPQEEEEFEE DFEEIEEETE TEPGKGQSVS 120
  121 SKRRARRNRM QKYMQVMQRG RFHEIQAIRE EVALSHGSAR D

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle