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View Structure Prediction Details

Protein: gpr-2
Organism: Caenorhabditis elegans
Length: 525 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gpr-2.

Description E-value Query
Range
Subject
Range
gi|73959395 - gi|73959395|ref|XP_866421.1| PREDICTED: similar to Pins isoform 4 [Canis familiaris]
312.0 [0..21] [525..31]

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Predicted Domain #1
Region A:
Residues: [1-525]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDVSYYDGPK DEVIEAMLKS AVTAMKLGQY EDGKGRLEDT MEFGTSNFQL LGTIYMYYGR  60
   61 VCRHLNHDAK ALEFFEHELN MFKLIFNYPE ACDSTRRIVQ QALKMEKFSK ARRFAEDLID 120
  121 YTSNKKNGEK YIGQARILFA SVCLEGCERD VESNQDEKKK LLSICAEQIA AVKLFNENNT 180
  181 EGAVSETKIM LIEAKCLSLD EKYEESRRKY QECIDFAIKT DQFEAVHIAY YDKALYAETY 240
  241 LLFFIIRDLR SALFYATKFG KERDVVKYKS KLSEEMLRNG EFHEAYLYGL EALVSIRKLG 300
  301 LNEHIGDVLL TIAKCLIALG KRRQAAYFII LGSVLTINQS SFKLFYEQID VAMNQERSET 360
  361 ATDQDACLAI DSSPDPTSSN DMINKFVVKL EHATNVETWE MIVNGIIEDQ KKPVAIEKKE 420
  421 NEEPVDMMDL IFSMSSRMDD QRTELSAARF IPPRPVSSAS KKTTKSHRIL PGLRANWTKV 480
  481 QSMKFDGHTM NRILKRSKKS KSSLDSTNSI QGDDTRSDDV TMTSK

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 6.69897
Match: 1xi4A
Description: Clathrin D6 Coat
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle