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View Structure Prediction Details

Protein: CE00082
Organism: Caenorhabditis elegans
Length: 327 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE00082.

Description E-value Query
Range
Subject
Range
gi|70878103 - gi|70878103|gb|EAN91386.1| trans-sialidase, putative [Trypanosoma cruzi]
gi|71648919 - gi|71648919|ref|XP_813237.1| trans-sialidase [Trypanosoma cruzi strain CL Brener]
161.0 [0..5] [324..741]

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Predicted Domain #1
Region A:
Residues: [1-78]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MCSVKPKYIS LPEQNSLCSL PNSGCCQVEV KIGRSKWEQQ KAILVKVDGE PAGKIFIYSQ  60
   61 PLIGQMYPLH ELKSMGVI

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [79-327]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 CEKAGDFLVN LVTERGLKLT FKPIGSTANC FVTALVSGNF TSLTHETHIK TPLQNQEATT  60
   61 SPTIESDLTD KPDTNVYTGS REGYVAPSEK GSNEKKKEVV PNGGDKSVEN KKGSDRNVKK 120
  121 TPSKTVTKPL LSESRKRKEA KTLATTQSQD LPAPTKDEPE RTNSEPDNGE QEKIKKEKKK 180
  181 GTETSLKDGK NKLNEKIVKP APTTTPDAGN GGLTPGKEDN KKTVTTSSVE IEVPEKKKAV 240
  241 ENAGIIKIS

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle