YRC Public Data Repository - Protein Structure Prediction

Protein:	SPBC21B10.06c
Organism:	Schizosaccharomyces pombe
Length:	470 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPBC21B10.06c.

Description	E-value	Query Range	Subject Range
gi\|38566989, gi\|... - gi\|38566989\|emb\|CAE76289.1\| hypothetical protein [Neurospora crassa], gi\|32422377\|ref\|XP_331632.1\| p... gi\|85114338 - gi\|85114338\|ref\|XP_964675.1\| hypothetical protein NCU09240 [Neurospora crassa OR74A]	551.0	[0..13]	[469..113]
gi\|39974669, gi\|... - gi\|39974669\|ref\|XP_368725.1\| hypothetical protein MG00519.4 [Magnaporthe grisea 70-15], gb\|EAA48861....	538.0	[0..49]	[469..90]
gi\|40747358, gi\|... - gi\|67516267\|ref\|XP_658019.1\| hypothetical protein AN0415.2 [Aspergillus nidulans FGSC A4], ref\|XP_40...	482.0	[0..43]	[466..78]
gi\|42546354, gi\|... - gi\|46108338\|ref\|XP_381227.1\| hypothetical protein FG01051.1 [Gibberella zeae PH-1], gi\|42546354\|gb\|E...	464.0	[0..49]	[469..118]
gi\|70990782, gi\|... - gi\|70990782\|ref\|XP_750240.1\| conserved hypothetical protein [Aspergillus fumigatus Af293], gi\|668478... gi\|159130716 - gi\|159130716\|gb\|EDP55829.1\| conserved hypothetical protein [Aspergillus fumigatus A1163]	426.0	[0..43]	[465..83]
gi\|115388545, gi... - gi\|115388545\|ref\|XP_001211778.1\| conserved hypothetical protein [Aspergillus terreus NIH2624], gi\|11...	421.0	[0..38]	[465..73]
gi\|116180574, gi... - gi\|88185212\|gb\|EAQ92680.1\| hypothetical protein CHGG_00915 [Chaetomium globosum CBS 148.51], gi\|1161...	416.0	[0..50]	[469..81]
gi\|90304253, gi\|... - gi\|90304253\|gb\|EAS33884.1\| hypothetical protein CIMG_04908 [Coccidioides immitis RS], gi\|119189721\|r...	318.0	[0..47]	[468..83]
gi\|111066772 - gi\|111066772\|gb\|EAT87892.1\| hypothetical protein SNOG_04132 [Phaeosphaeria nodorum SN15]	316.0	[0..43]	[469..71]
gi\|49649354, gi\|... - gi\|50552021\|ref\|XP_503485.1\| YALI0E03124p [Yarrowia lipolytica], gi\|49649354\|emb\|CAG79064.1\| unnamed... gi\|49649354 - gi\|49649354\|emb\|CAG79064.1\| YALI0E03124p [Yarrowia lipolytica]	116.0	[0..49]	[459..131]

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Predicted Domain #1

Region A:
Residues: [1-157]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNVDTQLSRD GLYSSLRTRY KVYISMHAFA IWHRFISFLA IYLWPCIMGS VNLNLQDREN  60
   61 EYFFDSIQYI IYTSELLVGD HELQRSHHEE QPSLVYPSSS FSSTSKFWRY FAYLLSLQIV 120
  121 IDFVLYKLSS AMASLHYLKF VKIIALSYIC FSSLIRI

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [158-216]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 CHCWTYFIRI MGLSSLNKFV NLLHDFETTS NRVYSQICEL EANSAANRSR LMDFLPAND

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [217-379]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PLLFNLTEQN TLSYELSGLY EKLLPRYQLV LSRIYPYAAA SNLRNLLSLY RLPNCFGKLN  60
   61 SFDLRKGSST SLKRSSMYLA RKENQDFDDQ STQILNHIKT AYYELTIISK QVLCCILSFP 120
  121 VDSFLAERSS WLIVHREVGD LSNALSVSMV RLVDILKFSV ESV

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4

Region A:
Residues: [380-470]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NRNQHNTTSK PFPRIMCKEN LRSLFNELHS VMMETHESIS SYIQEGDNTA MQTYAMDEYD  60
   61 QVGLLLKDLL SEWDFNRALL LNLQHMHRKR K

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.937	a.47.2	t-snare proteins

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits