YRC Public Data Repository - Protein Structure Prediction

Protein:	SPAPB1A10.15
Organism:	Schizosaccharomyces pombe
Length:	220 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPAPB1A10.15.

Description	E-value	Query Range	Subject Range
gi\|38110083, gi\|... - gi\|39951723\|ref\|XP_363578.1\| hypothetical protein MG01504.4 [Magnaporthe grisea 70-15], gb\|EAA55853....	245.0	[0..2]	[210..3]
gi\|116196210, gi... - gi\|88180616\|gb\|EAQ88084.1\| hypothetical protein CHGG_04703 [Chaetomium globosum CBS 148.51], gi\|1161...	230.0	[0..2]	[210..3]
gi\|46110110, gi\|... - gi\|46110110\|ref\|XP_382113.1\| hypothetical protein FG01937.1 [Gibberella zeae PH-1], gi\|42545990\|gb\|E...	217.0	[0..2]	[210..643]
gi\|32415816, gi\|... - gi\|32415816\|ref\|XP_328386.1\| predicted protein [Neurospora crassa], gi\|28923925\|gb\|EAA33086.1\| conse... gi\|85107162 - gi\|85107162\|ref\|XP_962322.1\| hypothetical protein NCU07680 [Neurospora crassa OR74A]	216.0	[0..2]	[210..598]
gi\|49651913, gi\|... - gi\|50557270\|ref\|XP_506043.1\| YALI0F30283p [Yarrowia lipolytica], gi\|49651913\|emb\|CAG78856.1\| unnamed... gi\|49651913 - gi\|49651913\|emb\|CAG78856.1\| YALI0F30283p [Yarrowia lipolytica]	213.0	[0..1]	[210..1]
gi\|73952528 - gi\|73952528\|ref\|XP_857065.1\| PREDICTED: similar to ARV1 homolog isoform 2 [Canis familiaris]	211.0	[0..2]	[213..43]
gi\|109509063, gi... - gi\|34851903\|ref\|XP_214713.2\| PREDICTED: similar to ARV1 homolog [Rattus norvegicus], gi\|157818753\|re...	211.0	[0..2]	[210..29]
gi\|109020012 - gi\|109020012\|ref\|XP_001106551.1\| PREDICTED: similar to ARV1 homolog [Macaca mulatta]	208.0	[0..2]	[205..33]
ARV1_MOUSE - Protein ARV1 OS=Mus musculus GN=Arv1 PE=2 SV=1	208.0	[0..2]	[210..28]

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Predicted Domain #1

Region A:
Residues: [1-108]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKCVECGAEV DSLYTYYGRG TSNIRLAQCK NCKQFADKYI ELDVVLISMD VILMKPQVYR  60
   61 HLLFNSLSAR TFRNLTKCAK VVNFCILISL FNVFLVWSRL EKRAALFP

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [109-220]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 YFTPAQAFLS QPIIRQYLTL LLICLVETTV YQISVVLLLC LTMGWKSWTS ASGAVILSSS  60
   61 TRMLPVFMVI WDYDLSIAAT VVEWVVLFSN VDALCILTGS RRTFTDSTIN SL

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits