YRC Public Data Repository - Protein Structure Prediction

Protein:	swc5
Organism:	Schizosaccharomyces pombe
Length:	215 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for swc5.

Description	E-value	Query Range	Subject Range
gi\|114663696 - gi\|114663696\|ref\|XP_001140581.1\| PREDICTED: similar to BCNT isoform 1 [Pan troglodytes]	181.0	[0..22]	[212..155]
gi\|109129224 - gi\|109129224\|ref\|XP_001109807.1\| PREDICTED: similar to craniofacial development protein 1 isoform 1 ...	177.0	[0..22]	[212..155]
gi\|1870230 - gi\|1870230\|gb\|AAB48683.1\| ORF [Emericella nidulans]	147.0	[0..20]	[212..50]
SWC5_EMENI - SWR1-complex protein 5 OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 /... SWC5_EMENI - SWR1-complex protein 5 OS=Emericella nidulans GN=swc5 PE=3 SV=1	145.0	[0..20]	[212..44]
gi\|2114205 - gi\|2114205\|dbj\|BAA20070.1\| bucentaur [Homo sapiens]	140.0	[0..22]	[212..76]
CFDP1_BOVIN - Craniofacial development protein 1 OS=Bos taurus GN=CFDP1 PE=2 SV=1	139.0	[0..15]	[212..90]
gi\|73957383 - gi\|73957383\|ref\|XP_546829.2\| PREDICTED: similar to craniofacial development protein 1 [Canis familia...	138.0	[0..15]	[212..91]

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Predicted Domain #1

Region A:
Residues: [1-215]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTEKLIDFGL EQEEEDTEFV PGDSTDTESS FSDADSSEEE FVEEKEASQV QSTKSKIATS  60
   61 ESEDVTLKNI AKKNKRERND KLIPQQSNES EAIEKPVQST TEVELKTNEL AESNSSVAVE 120
  121 GDENSYAETP KKKHSLIRKR RKSPLDSSSA QKVLKKNKLN TLEQAQQNWS KYIKEQDIQD 180
  181 ELRIANKDGY VERQEFLAKT RAAHEEKIRE MKKLP

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	0.959
Match:	2j63A
Description:	No description for 2j63A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits