YRC Public Data Repository - Protein Structure Prediction

Protein:	SPCC306.02c
Organism:	Schizosaccharomyces pombe
Length:	171 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPCC306.02c.

Description	E-value	Query Range	Subject Range
gi\|38107245, gi\|... - gi\|39972853\|ref\|XP_367817.1\| hypothetical protein MG07721.4 [Magnaporthe grisea 70-15], gb\|EAA53444....	170.0	[0..1]	[151..1]
gi\|147900343, gi... - gi\|46250204\|gb\|AAH68737.1\| MGC81207 protein [Xenopus laevis], gi\|147900343\|ref\|NP_001084542.1\| hypot...	169.0	[0..16]	[163..32]
gi\|114190003, gi... - gi\|115400948\|ref\|XP_001216062.1\| prenylated Rab acceptor 1 [Aspergillus terreus NIH2624], gi\|1141900...	169.0	[0..1]	[147..1]
gi\|40743672, gi\|... - gi\|67539198\|ref\|XP_663373.1\| hypothetical protein AN5769.2 [Aspergillus nidulans FGSC A4], ref\|XP_40...	169.0	[0..1]	[148..1]
PRAF1_MOUSE - Prenylated Rab acceptor protein 1 OS=Mus musculus GN=Rabac1 PE=1 SV=1	164.0	[0..19]	[159..32]
gi\|46124961, gi\|... - gi\|46124961\|ref\|XP_387034.1\| hypothetical protein FG06858.1 [Gibberella zeae PH-1], gi\|42553124\|gb\|E...	164.0	[0..1]	[166..1]
gi\|110645443, gi... - gi\|134026016\|gb\|AAI35391.1\| Hypothetical protein MGC146421 [Xenopus tropicalis], gi\|118404004\|ref\|NP...	162.0	[0..16]	[171..32]
PRAF1_RAT - Prenylated Rab acceptor protein 1 OS=Rattus norvegicus GN=Rabac1 PE=1 SV=1	161.0	[0..19]	[159..32]
gi\|60834043 - gi\|60834043\|gb\|AAX37076.1\| Rab acceptor 1 [synthetic construct]	161.0	[0..19]	[159..32]

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Predicted Domain #1

Region A:
Residues: [1-171]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSALSLSITK VSETFSEIYA SRAQYLSGFK SVGEFLDVRR ISRPRNFSEA QSRISFNFSR  60
   61 FSSNYLAIIA MLVIYALIRN PLLLIVIGIG VGGVYGIRKL QGADLQLSHR VISNQNLYVI 120
  121 LACVLIPLGL FASPIETIIW LVGASCVCVF GHAAFFEPPV ESAFETVEQQ V

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	51.522879
Match:	PF03208.10
Description:	No description for PF03208.10 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits