YRC Public Data Repository - Protein Structure Prediction

Protein:	mis13
Organism:	Schizosaccharomyces pombe
Length:	329 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for mis13.

Description	E-value	Query Range	Subject Range
gi\|42545135, gi\|... - gi\|46137251\|ref\|XP_390317.1\| hypothetical protein FG10141.1 [Gibberella zeae PH-1], gi\|42545135\|gb\|E...	311.0	[0..14]	[280..210]
gi\|85102960 - gi\|85102960\|ref\|XP_961430.1\| hypothetical protein NCU01344 [Neurospora crassa OR74A] gi\|28922975, gi\|... - gi\|32412714\|ref\|XP_326837.1\| hypothetical protein [Neurospora crassa], gi\|28922975\|gb\|EAA32194.1\| pr...	294.0	[0..43]	[280..231]
gi\|88184928, gi\|... - gi\|88184928\|gb\|EAQ92396.1\| hypothetical protein CHGG_00631 [Chaetomium globosum CBS 148.51], gi\|1161...	274.0	[0..19]	[280..202]
gi\|38111703, gi\|... - gi\|39946182\|ref\|XP_362628.1\| hypothetical protein MGG_08211 [Magnaporthe grisea 70-15], gb\|EAA57242....	273.0	[0..41]	[278..261]
gi\|67525459, gi\|... - gi\|67525459\|ref\|XP_660791.1\| hypothetical protein AN3187.2 [Aspergillus nidulans FGSC A4], ref\|XP_40...	271.0	[0..2]	[269..180]
orf19.3295, orf1... - orf19.3295 CGDID:CAL0003444 Assembly 19, Contig19-10173 (10811, 9387) CDS, reverse complemented, tra... gi\|68475540, gi\|... - gi\|68475540\|ref\|XP_718118.1\| hypothetical protein CaO19.3295 [Candida albicans SC5314], gi\|68475003\|...	270.0	[0..5]	[260..114]
gi\|46100353, gi\|... - gi\|71020509\|ref\|XP_760485.1\| hypothetical protein UM04338.1 [Ustilago maydis 521], ref\|XP_401953.1\| ...	240.0	[0..4]	[244..426]
gi\|44986277 - gi\|44986277\|gb\|AAS54737.1\| AGR247Cp [Ashbya gossypii ATCC 10895] gi\|45201343, gi\|... - gi\|45201343\|ref\|NP_986913.1\| AGR247Cp [Ashbya gossypii ATCC 10895], gi\|44986277\|gb\|AAS54737.1\| AGR24...	214.0	[0..60]	[274..212]
gi\|115391419, gi... - gi\|115391419\|ref\|XP_001213214.1\| predicted protein [Aspergillus terreus NIH2624], gi\|114194138\|gb\|EA...	209.0	[0..14]	[210..155]
gi\|90305080, gi\|... - gi\|90305080\|gb\|EAS34711.1\| hypothetical protein CIMG_00065 [Coccidioides immitis RS], gi\|119191376\|r...	199.0	[0..15]	[266..216]

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Predicted Domain #1

Region A:
Residues: [1-162]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKRKPEEQEG FVFVRKGKEK AGSKRRKSSV EDDPDTSQTD GLVELPVSDT PIVKRNKELR  60
   61 KGKGRRSSLD QRGKRASSIG TGFEALPHAD VPSHEYYRHI SKDLSEPLRI KQLLLWASSK 120
  121 ALEEQRKKYG ETEEASEAAI ARSIVQEVLN ELLANKVSVS WY

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [163-329]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QRPPDAVIPN KPHPQNLKNA QLVDELSAKL TQLHNEEAAW RAVAANSVSS DKSILSFKKA  60
   61 VESIDSKQDL DKQDSPLPPD DAPELPNISK LKPKFHTLLD MLAENIHTLH SLTNAGPEVR 120
  121 SSYGRLAAQD FIAHRKSLLS FSKYVDTMNL LRLLSEASYK SSSNESV

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits