YRC Public Data Repository - Protein Structure Prediction

Protein:	SPCC1682.05c
Organism:	Schizosaccharomyces pombe
Length:	597 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPCC1682.05c.

Description	E-value	Query Range	Subject Range
SRP68 - signal recognition particle 68kDa	537.0	[0..58]	[592..59]
gi\|109118336 - gi\|109118336\|ref\|XP_001103682.1\| PREDICTED: similar to signal recognition particle 68kDa isoform 8 [...	537.0	[0..58]	[592..54]
gi\|932, gi\|75134... - gi\|932\|emb\|CAA37773.1\| 68kDA subunit of signal recognition particle [Canis familiaris], pir\|\|A58947 ...	529.0	[0..58]	[592..50]
gi\|76645718 - gi\|76645718\|ref\|XP_582620.2\| PREDICTED: similar to signal recognition particle 68kDa isoform 1 [Bos ...	528.0	[0..58]	[592..59]
SRP68_MOUSE - Signal recognition particle subunit SRP68 OS=Mus musculus GN=Srp68 PE=1 SV=2	525.0	[0..58]	[592..58]
gi\|109492256, gi... - gi\|62657373\|ref\|XP_343987.2\| PREDICTED: similar to signal recognition particle 68 [Rattus norvegicus...	523.0	[0..58]	[592..58]
Srp68-PA - The gene Srp68 is referred to in FlyBase by the symbol Dmel\Srp68 (CG5064, FBgn0035947). It is a pro... gi\|220946370 - gi\|220946370\|gb\|ACL85728.1\| Srp68-PA [synthetic construct]	523.0	[0..44]	[577..10]

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Predicted Domain #1

Region A:
Residues: [1-162]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDPHVKLSTS LVIIAFRYLP NNFNDSRLGC DNLSTVGLCL KNGTGEVLFS GLIKQMANFY  60
   61 IFPLLLEARS DHFYEGNEYI KYLSHRIHGL RKSLHITQRG GKPKSSVDKR YAEILLFNAD 120
  121 RAFQQFVFLR SSQRRHALRR LKRADQFGKE LVSFTNAFDC ND

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [163-297]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 HIFYLEAIAF AKYIEGTLNY EKRDWEGSLS AFSISRLSFL VLQNKIDTLA EHEKSVLGEL  60
   61 QNQIDSNLRY VAQRTGLQNQ TKSLDILMLS SIPKDEEVIQ HVNSVDSEIL QMTGDEQDSL 120
  121 QTITVIEWRD QRVKI

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [298-597]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EHPDVVLALY AIHDVKNSPG TIDSKRDRLL AAWARAEEIT KSVLDNTGLE DEQKFQTLSI  60
   61 CYTYLAYNVV LLRIQRDLAV ENDSELVASQ AQLRSRQSLY DSIIKNIEIA KELPGIARDT 120
  121 GMTAQLEAQI SLAKSKRCQA IADAYQAQDK LASLAMCVRA ASYLQQVNDI LRNFEEKPHL 180
  181 IAFDIIPELK KDEKELKKKI LLLQSLASMG NINQPPKNLS LVETLDSYQT LAELEPSWNL 240
  241 TDADIRAIPA KPLFFDLAIT YLGQQTSFDK KKAQPEKPVT SVSKEPKQKN KGFFSSLLGR 300
  301

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits