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View Structure Prediction Details

Protein: SPAC23A1.16c
Organism: Schizosaccharomyces pombe
Length: 197 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPAC23A1.16c.

Description E-value Query
Range
Subject
Range
gi|18257341, gi|... - gi|21450301|ref|NP_659160.1| RNA polymerase II associated protein 2 [Mus musculus], gi|18257341|gb|A...
185.0 [0..14] [156..29]
RPAP2_RAT - RNA polymerase II subunit B1 CTD phosphatase Rpap2 OS=Rattus norvegicus GN=Rpap2 PE=1 SV=1
182.0 [0..14] [154..29]
gi|71297018 - gi|71297018|gb|AAH31070.1| RPAP2 protein [Homo sapiens]
181.0 [0..14] [154..29]
gi|114557714 - gi|114557714|ref|XP_001153375.1| PREDICTED: similar to Chromosome 1 open reading frame 82 isoform 2 ...
180.0 [0..14] [154..29]

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Predicted Domain #1
Region A:
Residues: [1-197]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNKKSILKKP KNAQSTQEKQ LITWSKSLID EARSRLQYDF FALEWIEKLV DPVSLETLEE  60
   61 ARKYLRKSDY DQVVKERKLV NLCGYPVCPY EPKQQTRYKL EDSGMKVYGG LNYYCSKDCF 120
  121 LKSCQYMVEL SDEPLWIRED AREAMKQHLD PRQDEAFRKE LENKKIEDVR LLLQALPVGY 180
  181 KAKVGEIVEH PLANEQS

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 104.275724
Match: PF04181.4
Description: No description for PF04181.4 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle