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View Structure Prediction Details

Protein: SPBC9B6.07
Organism: Schizosaccharomyces pombe
Length: 217 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPBC9B6.07.

Description E-value Query
Range
Subject
Range
RRP1B - ribosomal RNA processing 1 homolog B (S. cerevisiae)
304.0 [0..3] [211..8]
gi|114684565 - gi|114684565|ref|XP_001144086.1| PREDICTED: hypothetical protein isoform 2 [Pan troglodytes]
304.0 [0..3] [211..8]
gi|109065182 - gi|109065182|ref|XP_001104749.1| PREDICTED: hypothetical protein LOC23076 [Macaca mulatta]
300.0 [0..3] [211..8]
gi|28076997, gi|... - gi|28076997|ref|NP_082520.1| ribosomal RNA processing 1 homolog B [Mus musculus], gi|16741513|gb|AAH...
295.0 [0..2] [211..7]
gi|109509239, gi... - ref|XP_228076.2| similar to RIKEN cDNA 2600005C20 [Rattus norvegicus], gi|109509780|ref|XP_001071108...
294.0 [0..2] [211..7]
gi|76608383 - gi|76608383|ref|XP_870448.1| PREDICTED: similar to Protein KIAA0179 isoform 2 [Bos taurus]
280.0 [0..3] [211..8]

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Predicted Domain #1
Region A:
Residues: [1-144]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSAPSPFIKK LAANDRKTRD KALESLQRFL SQKKKFERLD FLKLWKGLFY CMWMADKPLY  60
   61 QQKLSDNLAA LVPIVWIDNR ILFQSTFWET MGREWTGIDI LRTDKFYLLM RRFCAAAFRD 120
  121 IQTRSKTALL DKVVAEYNQM WMDG

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [145-217]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PFNTENLAFP NGILFHLADI WTEELRKVYP EDVPKADWYL PFDSTIKSSH NVVLRKTLPK  60
   61 RLDRVSEYTK DSQ

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle