YRC Public Data Repository - Protein Structure Prediction

Protein:	SPCC1739.07
Organism:	Schizosaccharomyces pombe
Length:	133 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPCC1739.07.

Description	E-value	Query Range	Subject Range
gi\|114577766 - gi\|114577766\|ref\|XP_001167206.1\| PREDICTED: hypothetical protein isoform 1 [Pan troglodytes]	120.0	[0..3]	[127..65]
CG11030-PA, FBpp... - This gene is referred to in FlyBase by the symbol Dmel\CG11030 (CG11030, FBgn0031736). It is a prote...	116.0	[0..3]	[124..17]
C1D_BOVIN - Nuclear nucleic acid-binding protein C1D OS=Bos taurus GN=C1D PE=2 SV=1	115.0	[0..3]	[127..12]
gi\|116284035 - gi\|116284035\|gb\|AAH16581.1\| Utp3 protein [Mus musculus]	115.0	[0..3]	[126..220]
gi\|85113388 - gi\|85113388\|ref\|XP_964513.1\| hypothetical protein NCU02154 [Neurospora crassa OR74A] gi\|32417732, gi\|... - gi\|32417732\|ref\|XP_329344.1\| hypothetical protein [Neurospora crassa], gi\|28926298\|gb\|EAA35277.1\| co...	114.0	[0..1]	[114..1]
C1D - C1D nuclear receptor co-repressor gi\|167773923 - gi\|167773923\|gb\|ABZ92396.1\| nuclear DNA-binding protein [synthetic construct]	114.0	[0..3]	[127..12]
gi\|109103210 - gi\|109103210\|ref\|XP_001093680.1\| PREDICTED: similar to nuclear DNA-binding protein [Macaca mulatta]	113.0	[0..3]	[127..12]

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Predicted Domain #1

Region A:
Residues: [1-133]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDPEYSELFE RLNKQLDNVE DVLKPLKDAE SIFELAEGKS ELEQAKLYIT MSYAINSTLY  60
   61 SFYKLNGIDA SERPVMQELQ RVKNYISKIQ QAEKNVNPKT EAVNTSNAAI SSSSSNRPKV 120
  121 AKDAATRIIK HHT

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	22.468521
Match:	PF04000.6
Description:	No description for PF04000.6 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.967	N/A	N/A	f.36.1	Neurotransmitter-gated ion-channel pransmembrane pore

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits